RetrogeneDB ID: | retro_mmus_737 | ||
Retrocopylocation | Organism: | Mouse (Mus musculus) | |
Coordinates: | 11:93651058..93651966(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSMUSG00000082453 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | 4833439L19Rik | ||
Ensembl ID: | ENSMUSG00000025871 | ||
Aliases: | 4833439L19Rik, 4930558H15Rik, C81457, Kiaa1191, P33monox | ||
Description: | RIKEN cDNA 4833439L19 gene [Source:MGI Symbol;Acc:MGI:1921162] |
Percent Identity: | 84.64 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 3 |
Parental | MASRQPEVPALAPSGPLGKMSLPIGMCRRAFSYDDALEDPAPMTPPPSDMGSIP-WKPVIPERKYQHLDK |
MASRQPEVPALAPSGPLGKMSLPIGM.RRAFS.DDALEDPA.MTPPP.DM.SIP.WK.VIPE.KYQHLDK | |
Retrocopy | MASRQPEVPALAPSGPLGKMSLPIGMYRRAFS*DDALEDPATMTPPPLDMDSIP<WKSVIPESKYQHLDK |
Parental | TEEGAASVSSLAVTPSPATDSSDKAPVVKAKATHVIMSSLITKQTQESIQRFEQQAGLRDAGYTPHKG-L |
TEEGA.SVSSLA.TPSPATDSSDKAPVVKAKATHVI.SSLITKQTQESIQ.FEQQAGLRDAG.....G.. | |
Retrocopy | TEEGAVSVSSLAGTPSPATDSSDKAPVVKAKATHVIVSSLITKQTQESIQSFEQQAGLRDAGLHAP*G<V |
Parental | TTEETKYLRVAEALHKLKLQSGETAKEEKHPASAQSTPSSTPHASPKQKSRGWFPSGSSTALPAPNPHTM |
.TEET..LRV..ALHKLKLQSGET..EEK.PASAQSTPSST.H.SPKQKSRG.FPSGSSTALPAPN.HTM | |
Retrocopy | STEETDSLRVTGALHKLKLQSGETTREEKQPASAQSTPSSTGHLSPKQKSRGRFPSGSSTALPAPNHHTM |
Parental | DPGSGNDRNSADKWSLFGPRPLQKSDSGFAIQAYKGAPRPSPMEVMRAQATRVGEDPATFKPPKMDVPMV |
DPGS.NDRNSADKWSLFGPRPLQKSDS.FAIQA.KGAP.PSP.EVM.AQATR.GEDPAT.K.PKMDVP.V | |
Retrocopy | DPGSANDRNSADKWSLFGPRPLQKSDSAFAIQADKGAPKPSPVEVMYAQATRLGEDPATLKMPKMDVPVV |
Parental | EGKK-QPLRTHNLKPRDLNVLTPTGF |
EGK..Q.L.THNLK.RDLNV.TPTGF | |
Retrocopy | EGKR>QLL*THNLKSRDLNVFTPTGF |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .00 RPM | 107 .05 RPM |
SRP007412_cerebellum | 0 .00 RPM | 119 .76 RPM |
SRP007412_heart | 0 .03 RPM | 87 .41 RPM |
SRP007412_kidney | 0 .12 RPM | 539 .18 RPM |
SRP007412_liver | 0 .00 RPM | 63 .30 RPM |
SRP007412_testis | 0 .00 RPM | 39 .47 RPM |