RetrogeneDB ID:

retro_nleu_1327

Retrocopy
location
Organism:Gibbon (Nomascus leucogenys)
Coordinates:GL397289.1:5294973..5295645(+)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:KIAA1191
Ensembl ID:ENSNLEG00000012473
Aliases:None
Description:None


Retrocopy-Parental alignment summary:






>retro_nleu_1327
CCACCCATGACACTATCACCAGCCATTGACAGTACAGAGAAGATCCTGCTGGTGAAAACTAAAGCTACCCATTCATCAGA
AATTATTTGATCACAAAACAGACCCAGAAGAGCACTTAACATTTTGAGCAATAGGCAGGGCTAGGAGATCCTGGCTACAT
ACCCTCCAAGAGGCTTACCCTCAAGAAGACCGAGCACCTTTGAGTGACAGAAGCGCTTCATGAACTAAAGCTATGGAGTG
GGGAGATGACAAAAGAAGAGAAGCTCAGTGTATCAGCCCAGCCCATCCAAGCAGCACTCCTCACTCATTCCCTAAGCAGA
AGCCCAGAGGGCAGTCCACTGTGGTTCTTTCACATCTTTACCTGGCCCAAATCCAGCACCATGTATTCTGAAAGTGGAGG
TGAGGACAGAAACAGATCATATAAATGGAGCCTCCTTGGACCAAGATCCCCAGAAGTATGATCTGGGAGGTTTTGCCAGC
CAGGGCTACAGAGGAGCCCAGAAGCCCCCTCTAATAGAACTGATCCATGTCCAGATCACCTAAATAGCTGAAGATTAAGA
AACCTTCAAGCTACCCAAGATAAACATCTCAGTGATGGAAGAGAAGAAATAACCACCAAGGACCCATAACCTCAAACCCT
ATGACTTGAGTATACTCACATCCACTGCTTTC

ORF - retro_nleu_1327 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 60.61 %
Parental protein coverage: 74.1 %
Number of stop codons detected: 7
Number of frameshifts detected 5


Retrocopy - Parental Gene Alignment:

ParentalPAMTLSSAIDSVDKVPVVKAKATH-VIMNSLITKQTQESIQHFERQAGLRDAGYTPHKGLTTEETKYLRV
P.MTLS.AIDS..K...VK.KATH..I.N.LITKQTQ.S..HFE..AGL.D.GY.P.K.LT...T..L.V
RetrocopyPPMTLSPAIDSTEKILLVKTKATH<FIRNYLITKQTQKST*HFEQ*AGLGDPGYIPSKRLTLKKTEHL*V
ParentalAEALHKLKLQSGEITKEERQPASAQ-STPSTTPHSSPKQRPRGWFT-SGSSTALPGPNP-STMDSGSGDK
.EALH.LKL.SGE.TKEE....SAQ...PS.TPHS.PKQ.PRG..T..GS.T.LPGPNP.STM.S.SG..
RetrocopyTEALHELKLWSGEMTKEEKLSVSAQ<AHPSSTPHSFPKQKPRGQST<CGSFTSLPGPNP<STMYSESGGE
ParentalDRNLSDKWSLFGPRSLQKYDSGSF-ATQAYRGAQKPSPLELIRAQANRMAEDPAALKPPKMDIPVMEGKK
DRN.S.KWSL.GPRS.....SG.F.A.Q.YRGAQKP...ELI..Q....AED....K.PK..I.VME.KK
RetrocopyDRNRSYKWSLLGPRS-PEV*SGRF>ASQGYRGAQKPPLIELIHVQIT*IAED*ETFKLPKINISVMEEKK
ParentalQPPQAHNLKPRDLNVLTPTGF
.PP..HNLKP.DL..LT.T.F
Retrocopy*PPRTHNLKPYDLSILTSTAF

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






Nomascus leucogenys was not studied using RNA-Seq expression data.
Nomascus leucogenys was not studied using ChIP-Seq data.
Nomascus leucogenys was not studied using EST data.
Nomascus leucogenys was not studied using FANTOM5 data.
retro_nleu_1327 was not experimentally validated.

Retrocopy orthology:
Nomascus leucogenys does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:
Parental genes homology involve 25 parental genes, and 64 retrocopies.

Species Parental gene accession Retrocopies number
Choloepus hoffmanni ENSCHOG000000061234 retrocopies
Callithrix jacchus ENSCJAG000000123372 retrocopies
Cavia porcellus ENSCPOG000000194021 retrocopy
Dasypus novemcinctus ENSDNOG000000026763 retrocopies
Equus caballus ENSECAG000000032381 retrocopy
Felis catus ENSFCAG000000071891 retrocopy
Homo sapiens ENSG000001222034 retrocopies
Gorilla gorilla ENSGGOG000000238344 retrocopies
Loxodonta africana ENSLAFG000000288781 retrocopy
Myotis lucifugus ENSMLUG000000034981 retrocopy
Macaca mulatta ENSMMUG000000039213 retrocopies
Monodelphis domestica ENSMODG000000052746 retrocopies
Mustela putorius furoENSMPUG000000125791 retrocopy
Mus musculus ENSMUSG000000258712 retrocopies
Nomascus leucogenys ENSNLEG00000012473 4 retrocopies
Oryctolagus cuniculus ENSOCUG000000121913 retrocopies
Otolemur garnettii ENSOGAG000000082816 retrocopies
Procavia capensis ENSPCAG000000088391 retrocopy
Pongo abelii ENSPPYG000000160684 retrocopies
Pan troglodytes ENSPTRG000000175585 retrocopies
Pteropus vampyrus ENSPVAG000000124481 retrocopy
Rattus norvegicus ENSRNOG000000171332 retrocopies
Ictidomys tridecemlineatus ENSSTOG000000009462 retrocopies
Tupaia belangeri ENSTBEG000000131891 retrocopy
Tursiops truncatus ENSTTRG000000053761 retrocopy



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