RetrogeneDB ID: | retro_ggor_669 | ||
Retrocopylocation | Organism: | Gorilla (Gorilla gorilla) | |
Coordinates: | 11:99101007..99101915(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | KIAA1191 | ||
Ensembl ID: | ENSGGOG00000023834 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 82.85 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 4 |
Number of frameshifts detected | 4 |
Parental | MASRQPEVPALEASAPLGKMSLPIGIYRRALSYDDTLEDPAPMTPPPSDMGSVPWKPVIPER-KYQHLAK |
MASRQPEVPALEAS.PLGKM.LP..IY..A.SYDD.L.DPAPMT.PPSDMGSVPWKPVIPE...YQ...K | |
Retrocopy | MASRQPEVPALEASGPLGKMFLPTRIYHWA-SYDDALKDPAPMTLPPSDMGSVPWKPVIPEH<QYQCITK |
Parental | VEEGEASLPSPAMTLSSAIDSVDKVPVVKAK-ATHVIMNSLITKQTQESIQHFERQAGLRDAGYTPHKGL |
VEE.EASLPSPAMTLSSAIDSVDKVPVVKAK.ATHVIMN..ITKQTQESIQHF..QAGLRDAGYTPH.GL | |
Retrocopy | VEEDEASLPSPAMTLSSAIDSVDKVPVVKAK<ATHVIMNYRITKQTQESIQHFG*QAGLRDAGYTPHRGL |
Parental | TTEETKYLRVAEALHKLKLQSGEITKEERQPASAQS-TPSTTPHSSPKQRPRGWFTSGSSTALPGPNPST |
TTEETKYL.VA.ALH.LKLQ..EITKE.RQPASAQS...S.TPHSSPKQ.PRGW.TSGSSTALPGPNPST | |
Retrocopy | TTEETKYLPVAGALHRLKLQRREITKE*RQPASAQS<ASSSTPHSSPKQKPRGWLTSGSSTALPGPNPST |
Parental | MDSGSGDKDRNLSDKWSLFGPRSLQKYDSGSFATQAYR-GAQKPSPLELIGAQANRMAEDPAALKPPKMD |
MDSGSGDKDRNLS.KWSLFGPR.LQKYDSGSFATQAY..GA.KPSP.ELI.AQAN.MAEDP..LK.PKM. | |
Retrocopy | MDSGSGDKDRNLSGKWSLFGPRCLQKYDSGSFATQAYK<GA*KPSPMELIHAQAN*MAEDPVTLKLPKMN |
Parental | IPVMEGKKQPPRAHNLKPRDLNVLTPTGF |
I.VMEGKKQPP..H.LKP.DLNVL.PTGF | |
Retrocopy | ILVMEGKKQPPWTHKLKPPDLNVLIPTGF |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .19 RPM | 72 .70 RPM |
SRP007412_cerebellum | 0 .00 RPM | 65 .52 RPM |
SRP007412_heart | 0 .03 RPM | 10 .98 RPM |
SRP007412_kidney | 0 .00 RPM | 233 .48 RPM |
SRP007412_liver | 0 .00 RPM | 29 .39 RPM |
SRP007412_testis | 0 .10 RPM | 21 .45 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_817 |
Pan troglodytes | retro_ptro_568 |
Pongo abelii | retro_pabe_729 |
Macaca mulatta | retro_mmul_1082 |
Callithrix jacchus | retro_cjac_901 |