RetrogeneDB ID: | retro_mdom_218 | ||
Retrocopylocation | Organism: | Opossum (Monodelphis domestica) | |
Coordinates: | 1:309385309..309386254(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSMODG00000013647 | |
Aliases: | None | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSMODG00000005274 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 95.58 % |
Parental protein coverage: | 96.39 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | AGGLLGKMSLPIGMHRRAFSYDDVLEDPTPMTPPSSDMCSKVLWKKPVIPDRKYQQLSKVEDGETSLSSP |
AGGLLGKMSLPIGMH.RAFSYDDVLEDPTPMTPPSSDMCSKVLWKKPVIPD.KYQQLSKVEDGETSLSSP | |
Retrocopy | AGGLLGKMSLPIGMHPRAFSYDDVLEDPTPMTPPSSDMCSKVLWKKPVIPDWKYQQLSKVEDGETSLSSP |
Parental | SITPSASSDQMNKVPVVKAKATHVIMNSLITKQTQESIQRFEQQAGLRDAGYTPHKGLTTEEAKYHRVAE |
SITPSASSDQMNKVPVVKAKA.HVIMNSLITKQTQESIQRFEQQAGLRDAGYTPHKGL.TEEAK.H.VAE | |
Retrocopy | SITPSASSDQMNKVPVVKAKAMHVIMNSLITKQTQESIQRFEQQAGLRDAGYTPHKGLATEEAKSHHVAE |
Parental | AVHKLKLQNGEITKDDRLTVSAQSTPSSTPHSSPRQKPRGWFAHGSSNSLPGLDISNMDSGNGDRDKPSS |
AVHKLKLQNGEITKDDRLTVSAQST.SSTPHSSPRQKPRGWFAHGSSNSLPGLDIS.MDSGNGDRDKPSS | |
Retrocopy | AVHKLKLQNGEITKDDRLTVSAQSTQSSTPHSSPRQKPRGWFAHGSSNSLPGLDISSMDSGNGDRDKPSS |
Parental | EKWSLFGPRTLQKSDSGFSIQSYRGTQKPLPVELIRAQATRIAEDPAAFKPPKMDLPGMEGKKPAPRVHN |
EKWSLFGPRTLQKSDSGFSIQSYRG.QKP.PVELI.AQATRI.EDPAAFKPPKMDLPGMEGKKPAPRVHN | |
Retrocopy | EKWSLFGPRTLQKSDSGFSIQSYRGMQKPSPVELIWAQATRITEDPAAFKPPKMDLPGMEGKKPAPRVHN |
Parental | LKPRDMNVLTPTGF |
LKPRDMNVL.PTGF | |
Retrocopy | LKPRDMNVLIPTGF |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .36 RPM | 59 .60 RPM |
SRP007412_cerebellum | 0 .33 RPM | 62 .68 RPM |
SRP007412_heart | 1 .20 RPM | 245 .20 RPM |
SRP007412_kidney | 5 .27 RPM | 381 .88 RPM |
SRP007412_liver | 1 .01 RPM | 60 .92 RPM |
SRP007412_testis | 0 .59 RPM | 76 .41 RPM |