RetrogeneDB ID: | retro_pabe_223 | ||
Retrocopylocation | Organism: | Orangutan (Pongo abelii) | |
Coordinates: | 1:19951694..19952285(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | P33MONOX | ||
Ensembl ID: | ENSPPYG00000016068 | ||
Aliases: | None | ||
Description: | putative monooxygenase p33MONOX [Source:RefSeq peptide;Acc:NP_001126288] |
Percent Identity: | 80.2 % |
Parental protein coverage: | 64.59 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 0 |
Parental | LITKQTQESIQHFERQAGLRDAGYTPHKGLTTEETKYLRVAEALHKLKLQSGEITKEERQPASAQSTPST |
L.....QES.QHF..QAGLR.AGYTPHKGLTTEETKY..VAE.LH.LKLQSGE.T.EERQPASAQS.PS. | |
Retrocopy | LCSQNRQESTQHFG*QAGLRGAGYTPHKGLTTEETKYF*VAEVLHQLKLQSGERTREERQPASAQSAPSC |
Parental | TPHSSPKQRSRGWFTSGSSTALPGPNPSTMDSGSGDKDRNLSDKWSLFGPRSLQKYDSGSSATQAYRGVQ |
TPHSSP.QR.RGWFTSGSSTALPGPNPSTMDSGSG.KD.NLSDKWSLFGPRSLQK.DSGS.ATQAY.G.Q | |
Retrocopy | TPHSSPEQRPRGWFTSGSSTALPGPNPSTMDSGSGNKDKNLSDKWSLFGPRSLQKGDSGSFATQAYQGAQ |
Parental | KPSPLELIRAQANRMAEDPAALKPPKMDIPVMEGKKQPPRAHNLKPRDLNVLTPTGF |
KPSP.ELIRAQAN.M..DPA.L.PPK.DIPVMEG.KQ.P..H.LKP.DLN.LTPTGF | |
Retrocopy | KPSPMELIRAQANHMTRDPATLRPPKIDIPVMEGNKQLPWTHHLKPGDLNMLTPTGF |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .06 RPM | 119 .54 RPM |
SRP007412_cerebellum | 0 .00 RPM | 93 .15 RPM |
SRP007412_heart | 0 .00 RPM | 15 .86 RPM |
SRP007412_kidney | 0 .00 RPM | 265 .77 RPM |
SRP007412_liver | 0 .00 RPM | 28 .52 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_524 |
Pan troglodytes | retro_ptro_392 |
Gorilla gorilla | retro_ggor_482 |
Callithrix jacchus | retro_cjac_1699 |