RetrogeneDB ID: | retro_hsap_1641 | ||
Retrocopylocation | Organism: | Human (Homo sapiens) | |
Coordinates: | 16:52976398..52976918(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSG00000260258 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | KIAA1191 | ||
Ensembl ID: | ENSG00000122203 | ||
Aliases: | KIAA1191, p60MONOX | ||
Description: | KIAA1191 [Source:HGNC Symbol;Acc:29209] |
Percent Identity: | 59.22 % |
Parental protein coverage: | 57.38 % |
Number of stop codons detected: | 5 |
Number of frameshifts detected | 4 |
Parental | GYTPHKGLTTEETKYLRVAEALHKLKLQSGEVTKEERQPASAQST-PSTTPHSSPKQRPRGWFT-SGSST |
GY.P.K.LT...TK.L.V.EALH.LKL.SGE.TKE.....SAQS..PS..PHSSPKQ.PRG..T..GS.T | |
Retrocopy | GYIPSKRLTLKKTKHL*VTEALHELKLWSGEITKEKKLSVSAQSI<PSSNPHSSPKQKPRGQST<CGSFT |
Parental | ALPGPNP-STMDSGSGDKDRNLSDKWSLFGPRSLQKYDSGSF-ATQAYRGAQKPSPLELIRAQANRMAED |
.LPGP.P.STM.S.SG..DRN.S.K.S..GPRS.....SG.F.A.Q.YRGAQKP...ELI..Q....AED | |
Retrocopy | SLPGPDP<STMYSESGGEDRNRSYKCSILGPRS-PEV*SGRF>ASQGYRGAQKPPLIELIHVQIT*IAED |
Parental | PAALKPPKMDIPVMEGKKQPPRAHNLKPRDLNVLTPTGF |
....K.PK..I.VME.KK.PPR.HNLKP.DL..LT.T.F | |
Retrocopy | *ETFKLPKINISVMEEKK*PPRTHNLKPSDLSILTSTAF |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
bodymap2_adipose | 0 .00 RPM | 80 .15 RPM |
bodymap2_adrenal | 0 .00 RPM | 76 .17 RPM |
bodymap2_brain | 0 .00 RPM | 110 .97 RPM |
bodymap2_breast | 0 .00 RPM | 66 .48 RPM |
bodymap2_colon | 0 .00 RPM | 98 .44 RPM |
bodymap2_heart | 0 .00 RPM | 67 .86 RPM |
bodymap2_kidney | 0 .00 RPM | 266 .86 RPM |
bodymap2_liver | 0 .00 RPM | 49 .03 RPM |
bodymap2_lung | 0 .00 RPM | 111 .55 RPM |
bodymap2_lymph_node | 0 .00 RPM | 85 .59 RPM |
bodymap2_ovary | 0 .00 RPM | 141 .61 RPM |
bodymap2_prostate | 0 .00 RPM | 128 .05 RPM |
bodymap2_skeletal_muscle | 0 .00 RPM | 53 .00 RPM |
bodymap2_testis | 0 .00 RPM | 69 .98 RPM |
bodymap2_thyroid | 0 .02 RPM | 92 .76 RPM |
bodymap2_white_blood_cells | 0 .00 RPM | 61 .76 RPM |
Species | RetrogeneDB ID |
---|---|
Pan troglodytes | retro_ptro_1111 |
Gorilla gorilla | retro_ggor_1240 |
Library | Retrogene expression |
---|---|
CEU_NA11831 | 0 .00 RPM |
CEU_NA11843 | 0 .03 RPM |
CEU_NA11930 | 0 .00 RPM |
CEU_NA12004 | 0 .00 RPM |
CEU_NA12400 | 0 .00 RPM |
CEU_NA12751 | 0 .00 RPM |
CEU_NA12760 | 0 .00 RPM |
CEU_NA12827 | 0 .00 RPM |
CEU_NA12872 | 0 .00 RPM |
CEU_NA12873 | 0 .00 RPM |
FIN_HG00183 | 0 .00 RPM |
FIN_HG00277 | 0 .04 RPM |
FIN_HG00315 | 0 .00 RPM |
FIN_HG00321 | 0 .03 RPM |
FIN_HG00328 | 0 .00 RPM |
FIN_HG00338 | 0 .00 RPM |
FIN_HG00349 | 0 .00 RPM |
FIN_HG00375 | 0 .02 RPM |
FIN_HG00377 | 0 .00 RPM |
FIN_HG00378 | 0 .00 RPM |
GBR_HG00099 | 0 .00 RPM |
GBR_HG00111 | 0 .02 RPM |
GBR_HG00114 | 0 .00 RPM |
GBR_HG00119 | 0 .02 RPM |
GBR_HG00131 | 0 .00 RPM |
GBR_HG00133 | 0 .00 RPM |
GBR_HG00134 | 0 .00 RPM |
GBR_HG00137 | 0 .00 RPM |
GBR_HG00142 | 0 .03 RPM |
GBR_HG00143 | 0 .00 RPM |
TSI_NA20512 | 0 .00 RPM |
TSI_NA20513 | 0 .02 RPM |
TSI_NA20518 | 0 .00 RPM |
TSI_NA20532 | 0 .00 RPM |
TSI_NA20538 | 0 .00 RPM |
TSI_NA20756 | 0 .00 RPM |
TSI_NA20765 | 0 .02 RPM |
TSI_NA20771 | 0 .00 RPM |
TSI_NA20786 | 0 .00 RPM |
TSI_NA20798 | 0 .03 RPM |
YRI_NA18870 | 0 .00 RPM |
YRI_NA18907 | 0 .00 RPM |
YRI_NA18916 | 0 .00 RPM |
YRI_NA19093 | 0 .00 RPM |
YRI_NA19099 | 0 .00 RPM |
YRI_NA19114 | 0 .00 RPM |
YRI_NA19118 | 0 .00 RPM |
YRI_NA19213 | 0 .00 RPM |
YRI_NA19214 | 0 .00 RPM |
YRI_NA19223 | 0 .00 RPM |