RetrogeneDB ID: | retro_ggor_482 | ||
Retrocopylocation | Organism: | Gorilla (Gorilla gorilla) | |
Coordinates: | 1:209843886..209844791(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSGGOG00000005499 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | KIAA1191 | ||
Ensembl ID: | ENSGGOG00000023834 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 80.84 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 3 |
Parental | MASRQPEVPALEAS-APLGKMSLPIGIYRRALSYDDTLEDPAPMTPPPSDMGSVPWKPVIPERKYQHLAK |
.AS.QPEVPALEA....LGKMSLPIGI...A.SYDD.LEDP.P.TPP.SD.GSV.WKPVIPE.KYQ.LAK | |
Retrocopy | LASTQPEVPALEAG>GLLGKMSLPIGINCWASSYDDALEDPVPVTPP-SDTGSVRWKPVIPECKYQCLAK |
Parental | VEEGEASLPSPAMTLSSA-IDSV-DKVPVVKAKATHVIMNSLITKQTQESIQHFERQAGLRDAGYTPHKG |
.EEGEASL..PA.......IDSV.D.VPVVK.KATH.IMNSL.TKQTQES.QHF..QAGLR.AGYTPHKG | |
Retrocopy | EEEGEASL--PAPAMTLS<IDSV<DTVPVVKSKATHIIMNSLFTKQTQESTQHFGQQAGLRGAGYTPHKG |
Parental | LTTEETKYLRVAEALHKLKLQSGEITKEERQPASAQSTPSTTPHSSPKQRPRGWFTSGSSTALPGPNPST |
LT.EETKYLRVAE.LH.LKLQSGE.T.EERQPASAQS.PS.TPHSSP.QRPRGWFTSGSSTALPGPNPST | |
Retrocopy | LTAEETKYLRVAEVLHQLKLQSGERTREERQPASAQSAPSCTPHSSPEQRPRGWFTSGSSTALPGPNPST |
Parental | MDSGSGDKDRNLSDKWSLFGPRSLQKYDSGSFATQAYRGAQKPSPLELIGAQANRMAEDPAALKPPKMDI |
MDSGSGDKDRNLSDKWSLFGPRSLQK.DSGSFATQAY.GAQKPSP.ELI.AQAN.M..DPA.LKPPKMDI | |
Retrocopy | MDSGSGDKDRNLSDKWSLFGPRSLQKDDSGSFATQAYLGAQKPSPMELIRAQANHMTRDPATLKPPKMDI |
Parental | PVMEGKKQPPRAHNLKPRDLNVLTPTGF |
PVMEG.KQ.P..H.LKP.DLNVLTPTGF | |
Retrocopy | PVMEGNKQLPWTHHLKPGDLNVLTPTGF |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 72 .70 RPM |
SRP007412_cerebellum | 0 .08 RPM | 65 .52 RPM |
SRP007412_heart | 0 .00 RPM | 10 .98 RPM |
SRP007412_kidney | 0 .00 RPM | 233 .48 RPM |
SRP007412_liver | 0 .00 RPM | 29 .39 RPM |
SRP007412_testis | 0 .00 RPM | 21 .45 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_524 |
Pan troglodytes | retro_ptro_392 |
Pongo abelii | retro_pabe_223 |
Callithrix jacchus | retro_cjac_1699 |