RetrogeneDB ID: | retro_pcap_277 | ||
Retrocopylocation | Organism: | Hyrax (Procavia capensis) | |
Coordinates: | scaffold_256295:612..1105(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | KIAA1191 | ||
Ensembl ID: | ENSPCAG00000008839 | ||
Aliases: | None | ||
Description: | KIAA1191 [Source:HGNC Symbol;Acc:29209] |
Percent Identity: | 52.1 % |
Parental protein coverage: | 51.33 % |
Number of stop codons detected: | 4 |
Number of frameshifts detected | 3 |
Parental | LRVAEALHKLKLQSGEITKEE---KQPASAQST----PSSTPHSSP-KQKSRGWFTSGSSIALPAPS-SV |
LR.AEA.HKLKLQ......E.....QP..A.ST....P.ST..S.P.KQK.RG.F.SGSS...P....S. | |
Retrocopy | LRAAEAFHKLKLQVKRLQRENSSLQQPTTAKSTPQPPPGSTSDSAP>KQKFRG*FISGSSTTFPVSN>SS |
Parental | IMDSRSG--DRNPSDKWSLFGPRSLQKSDSGGFATQAYKGAQKPSPVELIHVQATHM-AEDPAAFKPPKM |
.MDS.SG..DRN.S.K.S..GPRS..KSD..GF.TQ.....QK.SPVELIH...TH...EDP.....P.M | |
Retrocopy | TMDSGSGEEDRNSSNKYSFSGPRSF*KSDLRGFVTQD*SETQKSSPVELIHL*VTHQ<VEDPVVSQTPRM |
Parental | DIPVIE-KKQAPRTHNLKPRDLVLTPT |
.IPV....KQAP.TH.LKP..L...PT | |
Retrocopy | NIPVTKGNKQAPWTHKLKPHNLNVLPT |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |