RetrogeneDB ID: | retro_mmus_1580 | ||
Retrocopylocation | Organism: | Mouse (Mus musculus) | |
Coordinates: | 17:55247729..55248636(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | 4833439L19Rik | ||
Ensembl ID: | ENSMUSG00000025871 | ||
Aliases: | 4833439L19Rik, 4930558H15Rik, C81457, Kiaa1191, P33monox | ||
Description: | RIKEN cDNA 4833439L19 gene [Source:MGI Symbol;Acc:MGI:1921162] |
Percent Identity: | 86.89 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 1 |
Parental | MASRQPEVPALAPSGPLGKMSLPIGMCRRAFSYDD-ALEDPAPMTPPPSDMGSIPWKPVIPERKYQHLDK |
M.SRQPEV.ALAPSGPLGKMSLPIGMC.RAFSYDD.ALEDPAPMTPPPSD..SIPWKPVI.E.KYQHLDK | |
Retrocopy | MVSRQPEVLALAPSGPLGKMSLPIGMCHRAFSYDDDALEDPAPMTPPPSDICSIPWKPVITECKYQHLDK |
Parental | TEEGAASVSSLAVTPSPATDSSDKAPVVKAKATHVI-MSSLITKQTQESIQRFEQQAGLRDAGYTPHKGL |
TEEG.ASVS.LAVTPSPATDSSDKA..VKAKATHVI.M.SL..KQTQES...FEQQAGLR.A.YTPHKGL | |
Retrocopy | TEEGTASVSFLAVTPSPATDSSDKALLVKAKATHVI>MNSLMEKQTQESM*CFEQQAGLRVASYTPHKGL |
Parental | TTEETKYLRVAEALHKLKLQSGETAKEEKHPASAQSTPSSTPHASPKQKSRGWFPSGSSTALPAPNPHTM |
TTEETKYL.VAEAL.KLKLQSGETAKEEK.PASAQSTPSS.PH.SPKQKSRGWFPSGSSTALP..N.... | |
Retrocopy | TTEETKYL*VAEALRKLKLQSGETAKEEKRPASAQSTPSSIPHSSPKQKSRGWFPSGSSTALPDLN--II |
Parental | DPGSGNDRNSADKWSLFGPRPLQKSDSGFAIQAYKGAPRPSPMEVMRAQATRVGEDPATFKPPKMDVPMV |
D.GSGNDRNSADKWS.F.P.PLQKSDSGFAIQ.YKGAP.PSPMEVM..QATRVGEDPATFKPPKMDVPMV | |
Retrocopy | DLGSGNDRNSADKWSIFRP*PLQKSDSGFAIQVYKGAPKPSPMEVMHTQATRVGEDPATFKPPKMDVPMV |
Parental | EGKKQPLRTHNLKPRDLNVLTPTGF |
EGKKQPLRTHNLKPRDLNVLTPTGF | |
Retrocopy | EGKKQPLRTHNLKPRDLNVLTPTGF |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .05 RPM | 107 .05 RPM |
SRP007412_cerebellum | 0 .00 RPM | 119 .76 RPM |
SRP007412_heart | 0 .00 RPM | 87 .41 RPM |
SRP007412_kidney | 0 .12 RPM | 539 .18 RPM |
SRP007412_liver | 0 .00 RPM | 63 .30 RPM |
SRP007412_testis | 0 .00 RPM | 39 .47 RPM |