RetrogeneDB ID: | retro_pabe_2558 | ||
Retrocopylocation | Organism: | Orangutan (Pongo abelii) | |
Coordinates: | 4:125968246..125968870(-) | ||
Located in intron of: | ENSPPYG00000015034 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | P33MONOX | ||
Ensembl ID: | ENSPPYG00000016068 | ||
Aliases: | None | ||
Description: | putative monooxygenase p33MONOX [Source:RefSeq peptide;Acc:NP_001126288] |
Percent Identity: | 88.94 % |
Parental protein coverage: | 68.2 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | KAKATHVIMNSLITKQTQESIQHFERQAGLRDAGYTPHKGLTTEETKYLRVAEALHKLKLQSGEITKEER |
KAKATHVIMN.LITKQ.QES.QHF.RQAGLRDAGYTPHKG.TT..TKYLRVAEALHKLKLQSGEI.KEER | |
Retrocopy | KAKATHVIMNYLITKQNQESFQHFGRQAGLRDAGYTPHKGVTTQKTKYLRVAEALHKLKLQSGEIAKEER |
Parental | QPASAQSTPSTTPHSSPKQRSRGWFTSGSSTALPGPNPSTMDSGSGDKDRNLSDKWSLFGPRSLQKYDSG |
.PASA.STPSTT.H.S.KQR.RGWFTSGSSTALPGPNPS.MDSGSGDKDRNLSDK.SLFGPRSLQKYDSG | |
Retrocopy | PPASALSTPSTTSHFSLKQRPRGWFTSGSSTALPGPNPSIMDSGSGDKDRNLSDKCSLFGPRSLQKYDSG |
Parental | SSATQAYRGVQKPSPLELIRAQANRMAEDPAALKPPKMDIPVMEGKKQPPRAHNLKPRDLNVLTPTGF |
S.ATQAYRG.QKPSP.ELIRAQANRM.EDPAALKPPKM..PV.EGKKQPPRAHNLKPRDLNVLTPTGF | |
Retrocopy | SFATQAYRGAQKPSPTELIRAQANRMSEDPAALKPPKMEFPVTEGKKQPPRAHNLKPRDLNVLTPTGF |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 119 .54 RPM |
SRP007412_cerebellum | 0 .00 RPM | 93 .15 RPM |
SRP007412_heart | 0 .00 RPM | 15 .86 RPM |
SRP007412_kidney | 0 .00 RPM | 265 .77 RPM |
SRP007412_liver | 0 .00 RPM | 28 .52 RPM |