RetrogeneDB ID: | retro_hsap_3204 | ||
Retrocopylocation | Organism: | Human (Homo sapiens) | |
Coordinates: | 5:79796151..79796819(+) | ||
Located in intron of: | ENSG00000152380 | ||
Retrocopyinformation | Ensembl ID: | ENSG00000240003 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL7 | ||
Ensembl ID: | ENSG00000147604 | ||
Aliases: | RPL7, L7, humL7-1 | ||
Description: | ribosomal protein L7 [Source:HGNC Symbol;Acc:10363] |
Percent Identity: | 87.11 % |
Parental protein coverage: | 90.32 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 1 |
Parental | MEGVEEKKKEVPAVPETLKKKRRNFAELKIKRLRKKFAQKMLRKARRKLIYEKAKHYHKEYRQMYRTEIR |
MEGVEEK.K.VPAVPETLKKK..NFAELKIK.LRKKF.QKML.KARRKLI.EKAKH.HKEYRQ.YRTE.. | |
Retrocopy | MEGVEEKEK-VPAVPETLKKKQGNFAELKIKCLRKKFTQKML*KARRKLICEKAKHCHKEYRQIYRTEF* |
Parental | MARMARKAGNFYVPAEPKLAFVIRIRGINGVSPKVRKVLQLLRLRQIFNGTFVKLNK-ASINMLRIVEPY |
MARMARKAGNF.VPAEPK.AFV.RIRG..GVSPKVRKVLQLLRL.QIF.GTFVKLN..AS.NMLRIVEPY | |
Retrocopy | MARMARKAGNFCVPAEPKMAFVLRIRGVSGVSPKVRKVLQLLRLHQIFSGTFVKLNR<ASVNMLRIVEPY |
Parental | IAWGYPNLKSVNELIYKRGYGKINKKRIALTDNALIARSLGKYGIICMEDLIHEIYTVGKRFKEANNFLW |
IAWGYPNLKSVNELIYKRGYGKINKKRIALTDN.LI..SLGKYGI.CMEDLIHEIYTVGK.FKEANN.LW | |
Retrocopy | IAWGYPNLKSVNELIYKRGYGKINKKRIALTDNTLIVPSLGKYGILCMEDLIHEIYTVGKHFKEANNLLW |
Parental | PFKLSSPRGGMKKKT |
PFKLSSP.GGMKKKT | |
Retrocopy | PFKLSSP*GGMKKKT |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
bodymap2_adipose | 0 .02 RPM | 732 .70 RPM |
bodymap2_adrenal | 0 .04 RPM | 756 .47 RPM |
bodymap2_brain | 0 .02 RPM | 227 .86 RPM |
bodymap2_breast | 0 .04 RPM | 671 .02 RPM |
bodymap2_colon | 0 .00 RPM | 1010 .05 RPM |
bodymap2_heart | 0 .00 RPM | 163 .75 RPM |
bodymap2_kidney | 0 .00 RPM | 459 .62 RPM |
bodymap2_liver | 0 .00 RPM | 197 .70 RPM |
bodymap2_lung | 0 .07 RPM | 567 .88 RPM |
bodymap2_lymph_node | 0 .00 RPM | 697 .27 RPM |
bodymap2_ovary | 0 .15 RPM | 1313 .51 RPM |
bodymap2_prostate | 0 .00 RPM | 945 .68 RPM |
bodymap2_skeletal_muscle | 0 .02 RPM | 360 .36 RPM |
bodymap2_testis | 0 .00 RPM | 532 .58 RPM |
bodymap2_thyroid | 0 .02 RPM | 532 .91 RPM |
bodymap2_white_blood_cells | 0 .00 RPM | 845 .39 RPM |
TSS No. | TSS Name | TSS expression level (Expr) in TPM range: | ||||
---|---|---|---|---|---|---|
no expression | 0 < Expr ≤ 1 | 1 < Expr ≤ 5 | 5 < Expr ≤ 10 | Expr > 10 | ||
TSS #1 | TSS_156158 | 495 libraries | 730 libraries | 587 libraries | 14 libraries | 3 libraries |
Species | RetrogeneDB ID |
---|---|
Pongo abelii | retro_pabe_2656 |
Library | Retrogene expression |
---|---|
CEU_NA11831 | 0 .00 RPM |
CEU_NA11843 | 0 .00 RPM |
CEU_NA11930 | 0 .00 RPM |
CEU_NA12004 | 0 .00 RPM |
CEU_NA12400 | 0 .00 RPM |
CEU_NA12751 | 0 .02 RPM |
CEU_NA12760 | 0 .00 RPM |
CEU_NA12827 | 0 .00 RPM |
CEU_NA12872 | 0 .00 RPM |
CEU_NA12873 | 0 .00 RPM |
FIN_HG00183 | 0 .00 RPM |
FIN_HG00277 | 0 .00 RPM |
FIN_HG00315 | 0 .00 RPM |
FIN_HG00321 | 0 .00 RPM |
FIN_HG00328 | 0 .00 RPM |
FIN_HG00338 | 0 .00 RPM |
FIN_HG00349 | 0 .00 RPM |
FIN_HG00375 | 0 .00 RPM |
FIN_HG00377 | 0 .00 RPM |
FIN_HG00378 | 0 .00 RPM |
GBR_HG00099 | 0 .00 RPM |
GBR_HG00111 | 0 .02 RPM |
GBR_HG00114 | 0 .00 RPM |
GBR_HG00119 | 0 .00 RPM |
GBR_HG00131 | 0 .00 RPM |
GBR_HG00133 | 0 .00 RPM |
GBR_HG00134 | 0 .02 RPM |
GBR_HG00137 | 0 .00 RPM |
GBR_HG00142 | 0 .00 RPM |
GBR_HG00143 | 0 .00 RPM |
TSI_NA20512 | 0 .00 RPM |
TSI_NA20513 | 0 .00 RPM |
TSI_NA20518 | 0 .00 RPM |
TSI_NA20532 | 0 .03 RPM |
TSI_NA20538 | 0 .05 RPM |
TSI_NA20756 | 0 .00 RPM |
TSI_NA20765 | 0 .06 RPM |
TSI_NA20771 | 0 .00 RPM |
TSI_NA20786 | 0 .00 RPM |
TSI_NA20798 | 0 .00 RPM |
YRI_NA18870 | 0 .00 RPM |
YRI_NA18907 | 0 .00 RPM |
YRI_NA18916 | 0 .00 RPM |
YRI_NA19093 | 0 .00 RPM |
YRI_NA19099 | 0 .00 RPM |
YRI_NA19114 | 0 .00 RPM |
YRI_NA19118 | 0 .00 RPM |
YRI_NA19213 | 0 .00 RPM |
YRI_NA19214 | 0 .00 RPM |
YRI_NA19223 | 0 .04 RPM |