RetrogeneDB ID: | retro_hsap_1001 | ||
Retrocopylocation | Organism: | Human (Homo sapiens) | |
Coordinates: | 12:53279559..53280114(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSG00000241146 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL7 | ||
Ensembl ID: | ENSG00000147604 | ||
Aliases: | RPL7, L7, humL7-1 | ||
Description: | ribosomal protein L7 [Source:HGNC Symbol;Acc:10363] |
Percent Identity: | 79.14 % |
Parental protein coverage: | 88.94 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 2 |
Parental | ARRKLIYEKAKHYHKEYRQMYRTEIRMARMARKAGNFYVPAEPKLA-FVIRIRGING-VSPKVRKVLQLL |
ARRKLIY.K.KHYHKEYRQ..RTEI..A.MA.KAGN.YVPAEP.....VIRIRGIN..VSP...KVLQL. | |
Retrocopy | ARRKLIYGKVKHYHKEYRQIDRTEIQLAQMASKAGNLYVPAEPNQV>AVIRIRGINV<VSPQDQKVLQLF |
Parental | RLRQIFNGTFVKLNKASINMLRIVEPYIAWGYPNLKSVNELIYKRGYGKINKKRIALTDNALIARSLGKY |
.L.QIFNG.FVKLNKAS.NMLRIVEPYIAWGYPN.KSVNELI.K.GY.KINKK..ALT.N.LIA..LGKY | |
Retrocopy | HLCQIFNGSFVKLNKASTNMLRIVEPYIAWGYPNMKSVNELICKCGYDKINKK*AALTENTLIA*PLGKY |
Parental | GIICMEDLIHEIYTVGKRFKEANNFLWPFKLSSPRGGMKKKTTHFVE |
.IICME.LIHEIYTVGK.FK.ANNFLWPFKLSSP.GGMKKKTTHFVE | |
Retrocopy | SIICMEVLIHEIYTVGKLFKKANNFLWPFKLSSP*GGMKKKTTHFVE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
bodymap2_adipose | 0 .00 RPM | 732 .70 RPM |
bodymap2_adrenal | 0 .00 RPM | 756 .47 RPM |
bodymap2_brain | 0 .00 RPM | 227 .86 RPM |
bodymap2_breast | 0 .00 RPM | 671 .02 RPM |
bodymap2_colon | 0 .00 RPM | 1010 .05 RPM |
bodymap2_heart | 0 .00 RPM | 163 .75 RPM |
bodymap2_kidney | 0 .00 RPM | 459 .62 RPM |
bodymap2_liver | 0 .00 RPM | 197 .70 RPM |
bodymap2_lung | 0 .00 RPM | 567 .88 RPM |
bodymap2_lymph_node | 0 .00 RPM | 697 .27 RPM |
bodymap2_ovary | 0 .00 RPM | 1313 .51 RPM |
bodymap2_prostate | 0 .00 RPM | 945 .68 RPM |
bodymap2_skeletal_muscle | 0 .00 RPM | 360 .36 RPM |
bodymap2_testis | 0 .00 RPM | 532 .58 RPM |
bodymap2_thyroid | 0 .00 RPM | 532 .91 RPM |
bodymap2_white_blood_cells | 0 .00 RPM | 845 .39 RPM |
ENCODE library ID | Target | ChIP-Seq Peak coordinates |
---|---|---|
ENCFF002CVJ | POLR2A | 12:53278479..53279089 |
ENCFF002CXQ | POLR2A | 12:53278447..53279097 |
Species | RetrogeneDB ID |
---|---|
Pongo abelii | retro_pabe_844 |
Library | Retrogene expression |
---|---|
CEU_NA11831 | 0 .00 RPM |
CEU_NA11843 | 0 .00 RPM |
CEU_NA11930 | 0 .00 RPM |
CEU_NA12004 | 0 .00 RPM |
CEU_NA12400 | 0 .00 RPM |
CEU_NA12751 | 0 .00 RPM |
CEU_NA12760 | 0 .00 RPM |
CEU_NA12827 | 0 .00 RPM |
CEU_NA12872 | 0 .00 RPM |
CEU_NA12873 | 0 .00 RPM |
FIN_HG00183 | 0 .00 RPM |
FIN_HG00277 | 0 .00 RPM |
FIN_HG00315 | 0 .00 RPM |
FIN_HG00321 | 0 .00 RPM |
FIN_HG00328 | 0 .00 RPM |
FIN_HG00338 | 0 .00 RPM |
FIN_HG00349 | 0 .00 RPM |
FIN_HG00375 | 0 .00 RPM |
FIN_HG00377 | 0 .00 RPM |
FIN_HG00378 | 0 .00 RPM |
GBR_HG00099 | 0 .00 RPM |
GBR_HG00111 | 0 .00 RPM |
GBR_HG00114 | 0 .00 RPM |
GBR_HG00119 | 0 .00 RPM |
GBR_HG00131 | 0 .00 RPM |
GBR_HG00133 | 0 .00 RPM |
GBR_HG00134 | 0 .00 RPM |
GBR_HG00137 | 0 .00 RPM |
GBR_HG00142 | 0 .00 RPM |
GBR_HG00143 | 0 .00 RPM |
TSI_NA20512 | 0 .00 RPM |
TSI_NA20513 | 0 .00 RPM |
TSI_NA20518 | 0 .00 RPM |
TSI_NA20532 | 0 .00 RPM |
TSI_NA20538 | 0 .00 RPM |
TSI_NA20756 | 0 .00 RPM |
TSI_NA20765 | 0 .00 RPM |
TSI_NA20771 | 0 .03 RPM |
TSI_NA20786 | 0 .00 RPM |
TSI_NA20798 | 0 .00 RPM |
YRI_NA18870 | 0 .00 RPM |
YRI_NA18907 | 0 .00 RPM |
YRI_NA18916 | 0 .00 RPM |
YRI_NA19093 | 0 .00 RPM |
YRI_NA19099 | 0 .00 RPM |
YRI_NA19114 | 0 .00 RPM |
YRI_NA19118 | 0 .00 RPM |
YRI_NA19213 | 0 .00 RPM |
YRI_NA19214 | 0 .00 RPM |
YRI_NA19223 | 0 .00 RPM |