Parental gene: | ENSCAFG00000008640 |
| Aliases: | None |
| Description: | None |
| Organism: | Dog (Canis familiaris) |
| Coordinates: | 27:5461575..5463452(+) |
>ENSCAFG00000008640
CAGCGTGAGTGTATCTCGATCCACGTTGGCCAGGCAGGTGTCCAGATCGGCAATGCCTGCTGGGAGCTCTATTGCCTGGA
ACACGGCATTCAGCCCGATGGCCAGATGCCAAGTGACAAGACCATTGGGGGAGGAGATGACTCCTTCAACACCTTCTTCA
GTGAGACGGGCGCTGGCAAGCATGTGCCCAGGGCAGTGTTTGTAGACCTGGAGCCCACAGTCATTGATGAAGTTCGCACT
GGCACCTACCGCCAGCTCTTCCACCCTGAGCAGCTCATCACAGGCAAGGAAGATGCTGCCAATAACTATGCCCGAGGGCA
CTACACCATTGGCAAGGAGATCATTGACCTTGTCTTGGACCGAATTCGGAAACTGGCTGACCAGTGCACGGGTCTTCAGG
GCTTCTTGGTTTTCCACAGCTTTGGCGGGGGAACTGGTTCTGGGTTCACCTCCCTGCTGATGGAACGTCTCTCTGTCGAT
TATGGCAAGAAGTCCAAGCTAGAGTTCTCCATCTACCCTGCCCCCCAGGTGTCCACAGCTGTAGTAGAGCCCTACAACTC
CATCCTCACCACCCACACCACCCTGGAGCACTCTGATTGTGCCTTCATGGTAGACAATGAGGCCATCTATGACATCTGTC
GTAGAAACCTTGATATTGAGCGCCCAACCTACACTAACCTCAACCGCCTTATTAGCCAGATTGTGTCCTCCATCACTGCT
TCCCTCAGATTTGATGGAGCCCTGAATGTGGATCTGACGGAGTTCCAGACCAACCTGGTGCCCTATCCCCGCATCCACTT
CCCTCTGGCCACATATGCCCCTGTCATCTCTGCTGAGAAAGCCTACCATGAACAGCTTTCTGTAGCAGAGATCACCAATG
CATGCTTTGAGCCAGCCAACCAGATGGTGAAATGTGACCCTCGCCATGGTAAATACATGGCTTGCTGCCTGTTGTACCGT
GGTGACGTGGTTCCCAAAGATGTCAATGCTGCCATTGCCACCATCAAGACCAAGCGCAGCATCCAGTTTGTAGACTGGTG
CCCCACTGGCTTCAAAGTGGGCATTAATTACCAGCCTCCCACTGTGGTACCCGGTGGAGACCTGGCCAAAGTACAGCGAG
CTGTGTGCATGCTGAGCAACACCACAGCCATTGCTGAGGCCTGGGCTCGCCTGGACCACAAGTTTGACCTGATGTATGCC
AAGCGTGCCTTTGTTCACTGGTATGTGGGTGAGGGCATGGAGGAAGGAGAGTTTTCTGAGGCCCGTGAGGACATGGCTGC
CCTGGAGAAGGATTATGAGGAGGTTGGTGTGGATTCTGTTGAAGGAGAGGGTGAAGAAGAAGGAGAGGAATACTAA
CAGCGTGAGTGTATCTCGATCCACGTTGGCCAGGCAGGTGTCCAGATCGGCAATGCCTGCTGGGAGCTCTATTGCCTGGA
ACACGGCATTCAGCCCGATGGCCAGATGCCAAGTGACAAGACCATTGGGGGAGGAGATGACTCCTTCAACACCTTCTTCA
GTGAGACGGGCGCTGGCAAGCATGTGCCCAGGGCAGTGTTTGTAGACCTGGAGCCCACAGTCATTGATGAAGTTCGCACT
GGCACCTACCGCCAGCTCTTCCACCCTGAGCAGCTCATCACAGGCAAGGAAGATGCTGCCAATAACTATGCCCGAGGGCA
CTACACCATTGGCAAGGAGATCATTGACCTTGTCTTGGACCGAATTCGGAAACTGGCTGACCAGTGCACGGGTCTTCAGG
GCTTCTTGGTTTTCCACAGCTTTGGCGGGGGAACTGGTTCTGGGTTCACCTCCCTGCTGATGGAACGTCTCTCTGTCGAT
TATGGCAAGAAGTCCAAGCTAGAGTTCTCCATCTACCCTGCCCCCCAGGTGTCCACAGCTGTAGTAGAGCCCTACAACTC
CATCCTCACCACCCACACCACCCTGGAGCACTCTGATTGTGCCTTCATGGTAGACAATGAGGCCATCTATGACATCTGTC
GTAGAAACCTTGATATTGAGCGCCCAACCTACACTAACCTCAACCGCCTTATTAGCCAGATTGTGTCCTCCATCACTGCT
TCCCTCAGATTTGATGGAGCCCTGAATGTGGATCTGACGGAGTTCCAGACCAACCTGGTGCCCTATCCCCGCATCCACTT
CCCTCTGGCCACATATGCCCCTGTCATCTCTGCTGAGAAAGCCTACCATGAACAGCTTTCTGTAGCAGAGATCACCAATG
CATGCTTTGAGCCAGCCAACCAGATGGTGAAATGTGACCCTCGCCATGGTAAATACATGGCTTGCTGCCTGTTGTACCGT
GGTGACGTGGTTCCCAAAGATGTCAATGCTGCCATTGCCACCATCAAGACCAAGCGCAGCATCCAGTTTGTAGACTGGTG
CCCCACTGGCTTCAAAGTGGGCATTAATTACCAGCCTCCCACTGTGGTACCCGGTGGAGACCTGGCCAAAGTACAGCGAG
CTGTGTGCATGCTGAGCAACACCACAGCCATTGCTGAGGCCTGGGCTCGCCTGGACCACAAGTTTGACCTGATGTATGCC
AAGCGTGCCTTTGTTCACTGGTATGTGGGTGAGGGCATGGAGGAAGGAGAGTTTTCTGAGGCCCGTGAGGACATGGCTGC
CCTGGAGAAGGATTATGAGGAGGTTGGTGTGGATTCTGTTGAAGGAGAGGGTGAAGAAGAAGGAGAGGAATACTAA
| Library | Parental gene expression (RPM) |
|---|---|
| SRP017611_brain | 647 .84 RPM |
| SRP017611_kidney | 186 .36 RPM |
| SRP017611_liver | 50 .18 RPM |
| SRP012049_cerebellum | 465 .89 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Ailuropoda melanoleuca | ENSAMEG00000006872 | ortholog_one2one | 4 retrogenes | |
| Canis familiaris | ENSCAFG00000005248 | other_paralog | 1 retrogene | |
| Canis familiaris | ENSCAFG00000008661 | within_species_paralog | 2 retrogenes | |
| Canis familiaris | ENSCAFG00000010412 | other_paralog | 1 retrogene | |
| Choloepus hoffmanni | ENSCHOG00000008444 | possible_ortholog | 2 retrogenes | |
| Cavia porcellus | ENSCPOG00000013016 | ortholog_one2one | 1 retrogene | |
| Felis catus | ENSFCAG00000027011 | ortholog_one2one | 1 retrogene | |
| Felis catus | ENSFCAG00000028689 | possible_ortholog | 3 retrogenes | |
| Loxodonta africana | ENSLAFG00000010021 | ortholog_one2one | 1 retrogene | |
| Microcebus murinus | ENSMICG00000017551 | ortholog_one2one | 3 retrogenes | |
| Myotis lucifugus | ENSMLUG00000002622 | ortholog_one2one | 4 retrogenes | |
| Otolemur garnettii | ENSOGAG00000009435 | possible_ortholog | 1 retrogene | |
| Tupaia belangeri | ENSTBEG00000001671 | ortholog_one2one | 1 retrogene | |
| Tarsius syrichta | ENSTSYG00000013266 | ortholog_one2one | 7 retrogenes | |
| Tursiops truncatus | ENSTTRG00000004794 | ortholog_one2one | 1 retrogene |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_cfam_463 | 92.24 | 99.56 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_cfam_926 | 74.19 | 60.98 | Please wait, loading | Please wait, loading | Please wait, loading |
| 3. | retro_cfam_1481 | 86.70 | 99.56 | Please wait, loading | Please wait, loading | Please wait, loading |
| 4. | retro_cfam_1751 | 93.61 | 99.78 | Please wait, loading | Please wait, loading | Please wait, loading |
| 5. | retro_cfam_1895 | 88.94 | 99.78 | Please wait, loading | Please wait, loading | Please wait, loading |
| 6. | retro_cfam_1917 | 89.39 | 79.16 | Please wait, loading | Please wait, loading | Please wait, loading |
| 7. | retro_cfam_1979 | 92.46 | 99.78 | Please wait, loading | Please wait, loading | Please wait, loading |
| 8. | retro_cfam_2000 | 85.71 | 70.73 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSCAFG00000008640 retrocopies