RetrogeneDB ID: | retro_cfam_1481 | ||
Retrocopylocation | Organism: | Dog (Canis familiaris) | |
Coordinates: | 32:34795407..34796752(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSCAFG00000008640 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 86.7 % |
Parental protein coverage: | 99.56 % |
Number of stop codons detected: | 4 |
Number of frameshifts detected | 2 |
Parental | ECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGG-DDSFNTFFSETGAGKHVPRAVFVDLE |
E..SIHVGQAGVQ.GNACWE.YCLEHGIQP.GQMPSDKTI.GG..DSFNTFFSETG.G.HVP.AVF.DLE | |
Retrocopy | EYVSIHVGQAGVQVGNACWEPYCLEHGIQPNGQMPSDKTIEGG<SDSFNTFFSETGPGEHVPTAVFIDLE |
Parental | PTVIDEVRTGTYRQLFHPEQLIT-GKEDAANNYARGHYTIGKEIIDLVLDRIRKLADQCTGLQGFLVFHS |
PTVIDEV.TGTY.QLFHPEQLI..GKEDAA.NYA.GHYTI.KEIIDLVLD.IRK.ADQCTGLQ.FLVFHS | |
Retrocopy | PTVIDEVHTGTYCQLFHPEQLIQ<GKEDAASNYAQGHYTIDKEIIDLVLD*IRKRADQCTGLQRFLVFHS |
Parental | FGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIY |
FGGGTG..FTSLLME..SVDY.KKSKLEFSIY..PQVSTAVVEPYNSILTTHTTLEHSDC.F.VDNEAIY | |
Retrocopy | FGGGTGFEFTSLLMEHVSVDYVKKSKLEFSIYSVPQVSTAVVEPYNSILTTHTTLEHSDCVFIVDNEAIY |
Parental | DICRRNLDIERPTYTNLNRLISQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEK |
DIC.RNLDIERPTYTNLNRLI.QIVSSITASLRFDGALNVDL.EFQTNLVPYP.IHF..ATYAPVIS.EK | |
Retrocopy | DICCRNLDIERPTYTNLNRLIGQIVSSITASLRFDGALNVDLMEFQTNLVPYPHIHFHVATYAPVISSEK |
Parental | AYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCLLYRGDVVPKDVNAAIATIKTKRSIQFVDWCPTG |
AYHEQLSVAEITNACF.PANQMVKCDPRH.KY..CCLLY...VVPKDV.AAIATIKTKR.IQFVD.C.TG | |
Retrocopy | AYHEQLSVAEITNACFGPANQMVKCDPRHDKYITCCLLYSSNVVPKDVSAAIATIKTKRTIQFVD*CSTG |
Parental | FKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSE |
FKVGIN.QP.TVVPGGDLAKV..AVCMLS.TTAIAEAWA.LDHKFDLMYAK.AFVHWYVGEGMEEGEFSE | |
Retrocopy | FKVGINFQPITVVPGGDLAKV**AVCMLSTTTAIAEAWACLDHKFDLMYAKHAFVHWYVGEGMEEGEFSE |
Parental | AREDMAALEKDYEEVGVDSVEGEGEEEGEEY |
ARE.MA.LEKDYEEVGVDS.EGEGE.EGEEY | |
Retrocopy | AREGMATLEKDYEEVGVDSIEGEGEKEGEEY |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012049_cerebellum | 0 .04 RPM | 465 .89 RPM |
SRP017611_brain | 0 .00 RPM | 647 .84 RPM |
SRP017611_kidney | 0 .00 RPM | 186 .36 RPM |
SRP017611_liver | 0 .07 RPM | 50 .18 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000006872 | 4 retrocopies | |
Canis familiaris | ENSCAFG00000005248 | 1 retrocopy | |
Canis familiaris | ENSCAFG00000008640 | 8 retrocopies |
retro_cfam_1481 , retro_cfam_1751, retro_cfam_1895, retro_cfam_1917, retro_cfam_1979, retro_cfam_2000, retro_cfam_463, retro_cfam_926,
|
Canis familiaris | ENSCAFG00000008661 | 2 retrocopies | |
Canis familiaris | ENSCAFG00000010412 | 1 retrocopy | |
Choloepus hoffmanni | ENSCHOG00000008444 | 2 retrocopies | |
Cavia porcellus | ENSCPOG00000013016 | 1 retrocopy | |
Felis catus | ENSFCAG00000027011 | 1 retrocopy | |
Felis catus | ENSFCAG00000028689 | 3 retrocopies | |
Loxodonta africana | ENSLAFG00000010021 | 1 retrocopy | |
Microcebus murinus | ENSMICG00000017551 | 3 retrocopies | |
Myotis lucifugus | ENSMLUG00000002622 | 4 retrocopies | |
Otolemur garnettii | ENSOGAG00000009435 | 1 retrocopy | |
Tupaia belangeri | ENSTBEG00000001671 | 1 retrocopy | |
Tarsius syrichta | ENSTSYG00000013266 | 7 retrocopies | |
Tursiops truncatus | ENSTTRG00000004794 | 1 retrocopy |