RetrogeneDB ID: | retro_cfam_2000 | ||
Retrocopylocation | Organism: | Dog (Canis familiaris) | |
Coordinates: | 9:27693798..27694751(-) | ||
Located in intron of: | ENSCAFG00000030895 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSCAFG00000008640 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 85.71 % |
Parental protein coverage: | 70.73 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 3 |
Parental | QRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKHVP-RAVFVD |
.RECISI.V.QA.VQI.NACWELYCLEH.IQPDGQMPSD.TIGGGDDSFNTFFSE.G.GKHVP.RAVFVD | |
Retrocopy | KRECISIYVDQARVQISNACWELYCLEHSIQPDGQMPSDETIGGGDDSFNTFFSEMGTGKHVP<RAVFVD |
Parental | LEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLDRIRKLADQCTGLQGFLVFH |
LEP....EVRTGTY.QLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLD.IRKL.DQC.GLQGFLVFH | |
Retrocopy | LEPIIVNEVRTGTYCQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLD*IRKLDDQCMGLQGFLVFH |
Parental | SFGGGTGSGFTSLLMER-LSVDYGKKSKLEFSIYPAPQVSTAVVEP-YNSILTTHTTLEHSDCAFMVDNE |
SF.GG..S.....L.....SVDYGKKSKLEFSIY.A.QVSTA.V.P.YNSILTTHTTLEHSDCAFMVDNE | |
Retrocopy | SF-GGGTSSGFTSLLME>VSVDYGKKSKLEFSIYLALQVSTAIVDP<YNSILTTHTTLEHSDCAFMVDNE |
Parental | AIYDICRRNLDIERPTYTNLNRLISQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVIS |
AIYDIC.RNLDIE.PTYTNLN.LI.QIVSSITASLRFD.ALNVDL.EFQTNLVPYP.IHFPLAT..PVIS | |
Retrocopy | AIYDICCRNLDIECPTYTNLNKLIGQIVSSITASLRFDRALNVDLMEFQTNLVPYPHIHFPLATCTPVIS |
Parental | AEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCLLY |
AEKAYHEQLSVAEITNACFEPANQMVKCDP.HGKYMACCLLY | |
Retrocopy | AEKAYHEQLSVAEITNACFEPANQMVKCDPHHGKYMACCLLY |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012049_cerebellum | 0 .08 RPM | 465 .89 RPM |
SRP017611_brain | 0 .48 RPM | 647 .84 RPM |
SRP017611_kidney | 0 .00 RPM | 186 .36 RPM |
SRP017611_liver | 0 .00 RPM | 50 .18 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000006872 | 4 retrocopies | |
Canis familiaris | ENSCAFG00000005248 | 1 retrocopy | |
Canis familiaris | ENSCAFG00000008640 | 8 retrocopies |
retro_cfam_1481, retro_cfam_1751, retro_cfam_1895, retro_cfam_1917, retro_cfam_1979, retro_cfam_2000 , retro_cfam_463, retro_cfam_926,
|
Canis familiaris | ENSCAFG00000008661 | 2 retrocopies | |
Canis familiaris | ENSCAFG00000010412 | 1 retrocopy | |
Choloepus hoffmanni | ENSCHOG00000008444 | 2 retrocopies | |
Cavia porcellus | ENSCPOG00000013016 | 1 retrocopy | |
Felis catus | ENSFCAG00000027011 | 1 retrocopy | |
Felis catus | ENSFCAG00000028689 | 3 retrocopies | |
Loxodonta africana | ENSLAFG00000010021 | 1 retrocopy | |
Microcebus murinus | ENSMICG00000017551 | 3 retrocopies | |
Myotis lucifugus | ENSMLUG00000002622 | 4 retrocopies | |
Otolemur garnettii | ENSOGAG00000009435 | 1 retrocopy | |
Tupaia belangeri | ENSTBEG00000001671 | 1 retrocopy | |
Tarsius syrichta | ENSTSYG00000013266 | 7 retrocopies | |
Tursiops truncatus | ENSTTRG00000004794 | 1 retrocopy |