RetrogeneDB ID: | retro_amel_1387 | ||
Retrocopylocation | Organism: | Panda (Ailuropoda melanoleuca) | |
Coordinates: | GL193307.1:262784..263641(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSAMEG00000006872 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 75.69 % |
Parental protein coverage: | 63.22 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 1 |
Parental | ECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKHVPRAVFVDLEP |
EC.SIH.GQAGV.IGN.CWELYCLEHGIQ.DGQ.PSDKT..GGDD.F.......G.G.HVPRA.FVDLEP | |
Retrocopy | ECFSIHIGQAGV*IGNTCWELYCLEHGIQHDGQVPSDKTTRGGDDPFTLSPVRRGVGRHVPRAMFVDLEP |
Parental | TVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLDRIRKLADQCTGLQGFLVFHSFG |
TVIDEV..GTY...FHPE.LITGKEDAANNYA.....I.KEI.D.VLD.I.KLADQ.TGLQGFLVFHSFG | |
Retrocopy | TVIDEVHPGTY*EFFHPEKLITGKEDAANNYACKPDFISKEIVDPVLDCIPKLADQGTGLQGFLVFHSFG |
Parental | -GGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYD |
..GTGSGF.SLLME.LSVDYGKKSKL.FSI.PAP.VSTA.VE...SILTT..TLEH.D....VD..AI.D | |
Retrocopy | <RGTGSGFISLLMEQLSVDYGKKSKLDFSI*PAPRVSTALVELDSSILTT-DTLEHYDFSSVVDDYAICD |
Parental | ICRRNLDIERPTYTNLNRLISQIVSSITASLRFDGALNVDLTEFQTNLVPYPCIHFPLATYAPVISAEKA |
IC.RNL.IE.PTYTNLNRLI.QI.SSITASLRFDGALN.DLTEFQT.LVPYPC..FPLATY.PVISAEK. | |
Retrocopy | ICHRNLNIELPTYTNLNRLIGQIMSSITASLRFDGALNIDLTEFQTKLVPYPCFYFPLATYVPVISAEKS |
Parental | YHEQLSVA |
Y.EQLS.A | |
Retrocopy | YYEQLSIA |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000006872 | 4 retrocopies | |
Ailuropoda melanoleuca | ENSAMEG00000011042 | 2 retrocopies | |
Canis familiaris | ENSCAFG00000008640 | 8 retrocopies | |
Choloepus hoffmanni | ENSCHOG00000008444 | 2 retrocopies | |
Cavia porcellus | ENSCPOG00000013016 | 1 retrocopy | |
Felis catus | ENSFCAG00000027011 | 1 retrocopy | |
Felis catus | ENSFCAG00000028689 | 3 retrocopies | |
Loxodonta africana | ENSLAFG00000010021 | 1 retrocopy | |
Microcebus murinus | ENSMICG00000017551 | 3 retrocopies | |
Myotis lucifugus | ENSMLUG00000002622 | 4 retrocopies | |
Otolemur garnettii | ENSOGAG00000009435 | 1 retrocopy | |
Tupaia belangeri | ENSTBEG00000001671 | 1 retrocopy | |
Tarsius syrichta | ENSTSYG00000013266 | 7 retrocopies | |
Tursiops truncatus | ENSTTRG00000004794 | 1 retrocopy |