RetrogeneDB ID: | retro_mluc_186 | ||
Retrocopylocation | Organism: | Microbat (Myotis lucifugus) | |
Coordinates: | GL430701:26474..27818(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSMLUG00000028994 | |
Aliases: | None | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | TUBA1B | ||
Ensembl ID: | ENSMLUG00000002622 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 96.18 % |
Parental protein coverage: | 98.89 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | RECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKHVPRAVFVDLE |
RECISIHVGQAGVQIGNACWELYCLEHGIQP.GQMPSDKTIGGGDDSFNTFFSETGAGK.VPRAVFVDLE | |
Retrocopy | RECISIHVGQAGVQIGNACWELYCLEHGIQPNGQMPSDKTIGGGDDSFNTFFSETGAGKYVPRAVFVDLE |
Parental | PTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLDRIRKLADQCTGLQGFLVFHSF |
PTVIDE.RTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLDRIRKLADQCTGLQGFL.FHSF | |
Retrocopy | PTVIDEIRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLDRIRKLADQCTGLQGFLIFHSF |
Parental | GGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYD |
GGGTGSGFTSLLME.LS.DYGKKSKL.FSIYPAPQVSTAVVEPYNSILTTH.TLEHSDCAF.VDNEAIYD | |
Retrocopy | GGGTGSGFTSLLMEHLSIDYGKKSKLQFSIYPAPQVSTAVVEPYNSILTTHATLEHSDCAFIVDNEAIYD |
Parental | ICRRNLDIERPTYTNLNRLISQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKA |
IC.RNLDIERPTYTNLNRLISQ.VSS.TASLRF.GALNVDLTEFQTNLVPYPRIHFPL.TYAPVISAEKA | |
Retrocopy | ICCRNLDIERPTYTNLNRLISQVVSSVTASLRFEGALNVDLTEFQTNLVPYPRIHFPLTTYAPVISAEKA |
Parental | YHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCLLYRGDVVPKDVNAAIATIKTKRSIQFVDWCPTGF |
YHEQLSVAEITNACFEPANQMVKCDPR.GKYMACCLLYRGDVVPKDVNAAIA.IKTKRSIQFVDWCPTGF | |
Retrocopy | YHEQLSVAEITNACFEPANQMVKCDPRRGKYMACCLLYRGDVVPKDVNAAIASIKTKRSIQFVDWCPTGF |
Parental | KVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEA |
KVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEA | |
Retrocopy | KVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEA |
Parental | REDMAALEKDYEEVGVDSVEGEGEE |
REDMAALEKDYEEVG.DSVEGEGEE | |
Retrocopy | REDMAALEKDYEEVGMDSVEGEGEE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000006872 | 4 retrocopies | |
Canis familiaris | ENSCAFG00000008640 | 8 retrocopies | |
Choloepus hoffmanni | ENSCHOG00000008444 | 2 retrocopies | |
Cavia porcellus | ENSCPOG00000013016 | 1 retrocopy | |
Felis catus | ENSFCAG00000027011 | 1 retrocopy | |
Felis catus | ENSFCAG00000028689 | 3 retrocopies | |
Loxodonta africana | ENSLAFG00000010021 | 1 retrocopy | |
Microcebus murinus | ENSMICG00000017551 | 3 retrocopies | |
Myotis lucifugus | ENSMLUG00000002622 | 4 retrocopies | |
Otolemur garnettii | ENSOGAG00000009435 | 1 retrocopy | |
Tupaia belangeri | ENSTBEG00000001671 | 1 retrocopy | |
Tarsius syrichta | ENSTSYG00000013266 | 7 retrocopies | |
Tursiops truncatus | ENSTTRG00000004794 | 1 retrocopy |