RetrogeneDB ID: | retro_tsyr_243 | ||
Retrocopylocation | Organism: | Tarsier (Tarsius syrichta) | |
Coordinates: | GeneScaffold_6126:27500..28174(+) | ||
Located in intron of: | ENSTSYG00000002034 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSTSYG00000013266 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 82.97 % |
Parental protein coverage: | 50.11 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 3 |
Parental | ECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAG-KHVPRAVFVDLE |
E..SIH.GQA.VQIG.ACWELYCLEHGI.PDG.MPSDKTI.GGD.SFNTFFSE.G.G..HVPRA.FVDLE | |
Retrocopy | E*VSIHIGQARVQIGSACWELYCLEHGI*PDGLMPSDKTIEGGDESFNTFFSEMGTG<QHVPRAMFVDLE |
Parental | PTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLDRIRKLADQCTGLQGFLVFHSF |
PTVIDEV.TG.YR.LFHPEQLI.G.EDAANNYA.G.YTIG.EIIDL.LD..RKL.DQCTGL.GFLVFHSF | |
Retrocopy | PTVIDEVCTGPYRLLFHPEQLI-GDEDAANNYAQGPYTIGMEIIDLILDPVRKLVDQCTGLRGFLVFHSF |
Parental | GG-GTG-GFTSLLMERLSVDYGKKSKLEFSIYPA-PQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAI |
.G.GTG.GFTSLLME.LSVDY.KKSKLEFSIYPA.PQVST.VVEPY.SILTT.TTLEHSD.AFMVDNEAI | |
Retrocopy | AG<GTGSGFTSLLMECLSVDYVKKSKLEFSIYPA>PQVSTVVVEPYTSILTTQTTLEHSDSAFMVDNEAI |
Parental | YDICRRNLDIERPTYTNLN |
YDICRRNL.IERPTYTNL. | |
Retrocopy | YDICRRNLYIERPTYTNLS |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000006872 | 4 retrocopies | |
Canis familiaris | ENSCAFG00000008640 | 8 retrocopies | |
Choloepus hoffmanni | ENSCHOG00000008444 | 2 retrocopies | |
Cavia porcellus | ENSCPOG00000013016 | 1 retrocopy | |
Felis catus | ENSFCAG00000027011 | 1 retrocopy | |
Felis catus | ENSFCAG00000028689 | 3 retrocopies | |
Loxodonta africana | ENSLAFG00000010021 | 1 retrocopy | |
Microcebus murinus | ENSMICG00000017551 | 3 retrocopies | |
Myotis lucifugus | ENSMLUG00000002622 | 4 retrocopies | |
Otolemur garnettii | ENSOGAG00000009435 | 1 retrocopy | |
Tupaia belangeri | ENSTBEG00000001671 | 1 retrocopy | |
Tarsius syrichta | ENSTSYG00000013266 | 7 retrocopies |
retro_tsyr_1014, retro_tsyr_1278, retro_tsyr_1281, retro_tsyr_1679, retro_tsyr_1834, retro_tsyr_243 , retro_tsyr_6,
|
Tursiops truncatus | ENSTTRG00000004794 | 1 retrocopy |