RetrogeneDB ID: | retro_amel_1367 | ||
Retrocopylocation | Organism: | Panda (Ailuropoda melanoleuca) | |
Coordinates: | GL193257.1:164292..165039(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSAMEG00000006872 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 74.7 % |
Parental protein coverage: | 55.29 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 2 |
Parental | ECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKHVPRAVFVDLEP |
ECISIHVGQAGV.IG.A.WELYCLEHGIQP.GQMPSDKT.GGGD.SFNTFF....A..HV.RAVFVDLEP | |
Retrocopy | ECISIHVGQAGVHIGSAFWELYCLEHGIQPNGQMPSDKTVGGGD-SFNTFFNDISASNHVSRAVFVDLEP |
Parental | TVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLDRIRKLADQCTGLQGFLVFHSFG |
TVIDEV.TGTY.QLFHPEQLITGKEDA..NYA.GHYTI.KEIIDLVL.RI.KL.DQC..LQ.FL.FHSF. | |
Retrocopy | TVIDEVCTGTYCQLFHPEQLITGKEDAVSNYAQGHYTIVKEIIDLVLGRIWKLTDQCAVLQSFLAFHSF- |
Parental | GGTGSGFTSLLMER-LSVDYGKKSKLEFSIYPAPQVST-AVVEPYNSILTTHTTLEHSDCAFMVDNEAIY |
GG........L.....SVDYG.KSK.EFSIYP.PQVS..AV.E.YNS.LTTHTTL.HSDCA.MVD..AI. | |
Retrocopy | GGATGSRFTSLLMK>VSVDYGTKSKPEFSIYPGPQVSM<AVLESYNSRLTTHTTL*HSDCASMVDIQAIS |
Parental | DICRRNLDIERPTYTNLNRLISQIVSSITASLRFDGALNVDLT |
DIC.R.LD.E...YTNLNRLI.QIV.S.TASLRFDG.LNV.LT | |
Retrocopy | DICGRKLDVEHAAYTNLNRLIGQIVFSNTASLRFDGVLNVHLT |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000006872 | 4 retrocopies | |
Ailuropoda melanoleuca | ENSAMEG00000011042 | 2 retrocopies | |
Canis familiaris | ENSCAFG00000008640 | 8 retrocopies | |
Choloepus hoffmanni | ENSCHOG00000008444 | 2 retrocopies | |
Cavia porcellus | ENSCPOG00000013016 | 1 retrocopy | |
Felis catus | ENSFCAG00000027011 | 1 retrocopy | |
Felis catus | ENSFCAG00000028689 | 3 retrocopies | |
Loxodonta africana | ENSLAFG00000010021 | 1 retrocopy | |
Microcebus murinus | ENSMICG00000017551 | 3 retrocopies | |
Myotis lucifugus | ENSMLUG00000002622 | 4 retrocopies | |
Otolemur garnettii | ENSOGAG00000009435 | 1 retrocopy | |
Tupaia belangeri | ENSTBEG00000001671 | 1 retrocopy | |
Tarsius syrichta | ENSTSYG00000013266 | 7 retrocopies | |
Tursiops truncatus | ENSTTRG00000004794 | 1 retrocopy |