RetrogeneDB ID: | retro_amel_1895 | ||
Retrocopylocation | Organism: | Panda (Ailuropoda melanoleuca) | |
Coordinates: | GL195345.1:27819..29017(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSAMEG00000006872 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 74.51 % |
Parental protein coverage: | 88.99 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 4 |
Parental | DSFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIID |
DS..TFF.ETGA.KHVPRAVFVDLE.TVIDEV.TGTY...FHPE.L.TGKEDAANNYARGHYTIGK.IID | |
Retrocopy | DSLSTFFCETGASKHVPRAVFVDLEHTVIDEVCTGTYCKHFHPEHLTTGKEDAANNYARGHYTIGK-IID |
Parental | LVLDRIRKLADQCTGLQGFLVFHSFGGGTGSGFTSLLMER-LSVDYGKKSKLEFSIYPAPQVSTAVVEPY |
LVLD.I..LA.QCTG.QGFLVFH.F.GG........L.....SV.YGKKSKLEFSIYP.PQVSTAVV.PY | |
Retrocopy | LVLDQIQ*LAKQCTGPQGFLVFHNF-GGGTGSGFTSLLMK>ISVNYGKKSKLEFSIYPTPQVSTAVVKPY |
Parental | NSILTTHTTLEHSDCAFMVDNEAIYDICRRN-LDIERPTYTNLNRLISQIVSSITASLRFDGALNVDLTE |
NS.LTTHTTL.HSD.AF.V.N.AIYDIC.RN.L..E..TYT.LNR.I.QI.SSITASLRFDG.LNVD.TE | |
Retrocopy | NSNLTTHTTLKHSDYAFIVENMAIYDICHRN<LYTECLTYTKLNRSICQILSSITASLRFDGTLNVDMTE |
Parental | FQTNLVPYPCIHFPLATYAPVISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCLLYRGDVV |
FQTNLVPYP.IHFPLATYAPVIS.EK.YHE.LSV.EITN..F..AN..VK.DP..GK.MAC.LLY.GDVV | |
Retrocopy | FQTNLVPYPYIHFPLATYAPVISVEKTYHE*LSVTEITNVYFQLANWRVKYDPHNGKCMACHLLYYGDVV |
Parental | PKDVNAAIATIKTKRSIQFVDWCPTGFKVGINYQPPTVVPG-GDLAKVQRAVCMLSNTTAIAEAWARLDH |
.KDVNAAIA.IKTK..IQFVD..PT..KVGINYQ.P..V.G.GDLAKVQRAVCMLSNTT..AEA.A.L.H | |
Retrocopy | SKDVNAAIAMIKTKCTIQFVDSYPTDIKVGINYQ-PLTVEG<GDLAKVQRAVCMLSNTTTPAEA*AHLNH |
Parental | -KFDLMYAKRAFVHWYVGEGMEEGEFSEAREDMAALEKDYEEVGVDSVEGEGEEEGEE |
..FDL..AKRAF.HW.VGEGM.E.EFSEA.E.MA.LEKDYEEVGVD.VEGE.E...EE | |
Retrocopy | <QFDLTCAKRAFGHWHVGEGMKE-EFSEAHEHMAPLEKDYEEVGVDFVEGESEGKEEE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000006872 | 4 retrocopies | |
Ailuropoda melanoleuca | ENSAMEG00000011042 | 2 retrocopies | |
Canis familiaris | ENSCAFG00000008640 | 8 retrocopies | |
Choloepus hoffmanni | ENSCHOG00000008444 | 2 retrocopies | |
Cavia porcellus | ENSCPOG00000013016 | 1 retrocopy | |
Felis catus | ENSFCAG00000027011 | 1 retrocopy | |
Felis catus | ENSFCAG00000028689 | 3 retrocopies | |
Loxodonta africana | ENSLAFG00000010021 | 1 retrocopy | |
Microcebus murinus | ENSMICG00000017551 | 3 retrocopies | |
Myotis lucifugus | ENSMLUG00000002622 | 4 retrocopies | |
Otolemur garnettii | ENSOGAG00000009435 | 1 retrocopy | |
Tupaia belangeri | ENSTBEG00000001671 | 1 retrocopy | |
Tarsius syrichta | ENSTSYG00000013266 | 7 retrocopies | |
Tursiops truncatus | ENSTTRG00000004794 | 1 retrocopy |