RetrogeneDB ID: | retro_tsyr_1679 | ||
Retrocopylocation | Organism: | Tarsier (Tarsius syrichta) | |
Coordinates: | scaffold_5419:25827..26813(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSTSYG00000013266 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 84.38 % |
Parental protein coverage: | 73.05 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 3 |
Parental | QMPSDKTIGGGDDSFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYA |
QMPSDKTIGGGDDSFN..FSETG.GKHVPRAV.VDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYA | |
Retrocopy | QMPSDKTIGGGDDSFN-IFSETGPGKHVPRAVSVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYA |
Parental | RGHYTIGKEIIDLVLDRIRKLADQCTGLQGFLVFHSFGGGTG-GFTSLLMERLSVDYGKKSKLEFSIYPA |
RG.YTIGKEIIDLVLDR..K.ADQCTGL.GFLVFHSFGG.TG.GFTSLLMERLSVDY.K.SKLEFSIY.A | |
Retrocopy | RGLYTIGKEIIDLVLDRFHKQADQCTGLPGFLVFHSFGGETGSGFTSLLMERLSVDYSKMSKLEFSIYSA |
Parental | PQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDI-CRR-NLDIERPTYTNLNRLISQIVSSITASL |
PQVSTAVVE.YNSILTTHTT.EHSDCAFMVD.E.IYDI.CR........PT.T....LISQIVSSITASL | |
Retrocopy | PQVSTAVVEAYNSILTTHTTPEHSDCAFMVDSEVIYDICCRN>SISSAQPTKTLTAFLISQIVSSITASL |
Parental | RFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLSVAEITNACFEP-ANQMVKCDPRHGK |
RFDGALNVDLTEFQTN.VPYP.IHFPLATYAPVISAEKAYHEQL.VAEITNA.FEP..NQMV.C...HGK | |
Retrocopy | RFDGALNVDLTEFQTNPVPYPGIHFPLATYAPVISAEKAYHEQLTVAEITNA*FEP<TNQMVICELHHGK |
Parental | YMACCLLYRGDVVPKDVNAAIAT-IKTKRSIQFVDWCPTGFKVGINYQPPTVV |
YM.CCLLY.GDVVPKDVN.AIAT.IKTK..IQFVDWC.TGFK.GINYQ.PT.V | |
Retrocopy | YMVCCLLYCGDVVPKDVNDAIAT<IKTKSAIQFVDWCATGFKFGINYQAPTMV |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000006872 | 4 retrocopies | |
Canis familiaris | ENSCAFG00000008640 | 8 retrocopies | |
Choloepus hoffmanni | ENSCHOG00000008444 | 2 retrocopies | |
Cavia porcellus | ENSCPOG00000013016 | 1 retrocopy | |
Felis catus | ENSFCAG00000027011 | 1 retrocopy | |
Felis catus | ENSFCAG00000028689 | 3 retrocopies | |
Loxodonta africana | ENSLAFG00000010021 | 1 retrocopy | |
Microcebus murinus | ENSMICG00000017551 | 3 retrocopies | |
Myotis lucifugus | ENSMLUG00000002622 | 4 retrocopies | |
Otolemur garnettii | ENSOGAG00000009435 | 1 retrocopy | |
Tupaia belangeri | ENSTBEG00000001671 | 1 retrocopy | |
Tarsius syrichta | ENSTSYG00000013266 | 7 retrocopies |
retro_tsyr_1014, retro_tsyr_1278, retro_tsyr_1281, retro_tsyr_1679 , retro_tsyr_1834, retro_tsyr_243, retro_tsyr_6,
|
Tursiops truncatus | ENSTTRG00000004794 | 1 retrocopy |