RetrogeneDB ID: | retro_mmur_144 | ||
Retrocopylocation | Organism: | Mouse Lemur (Microcebus murinus) | |
Coordinates: | GeneScaffold_1446:192771..194120(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSMICG00000017551 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 78.63 % |
Parental protein coverage: | 99.33 % |
Number of stop codons detected: | 6 |
Number of frameshifts detected | 3 |
Parental | ECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKHVPRAVFVDLEP |
E..SIHVG.AGVQ.GNACW...CLE.GIQP.GQMPSDKT.GG.DDSFNTFFSET..GK.VPRAVFVDLEP | |
Retrocopy | ERLSIHVGRAGVQTGNACWDHNCLELGIQPNGQMPSDKTTGGRDDSFNTFFSETSTGKRVPRAVFVDLEP |
Parental | TVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLDRIRKLADQCTGLQ-GFLVF-HS |
TVI.E...GTY.QLF.PEQLI.GK.DAANNY..GHY.IGKEI.DLVLD.I.KLA.QCT.LQ.G.L.F... | |
Retrocopy | TVINEIHIGTYCQLFSPEQLIIGK*DAANNYT*GHYNIGKEITDLVLDQIHKLANQCTALQ<GLLDFPQG |
Parental | FGGGTGSGFTS-LLMERLSVDYGKKSKLEFSIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAI |
FG.GTGSG.TS.LLME..SVDYG...KLE.SIYPAP.VSTAV.EPYNSILTTHTT.EHSDCAFMVDNEAI | |
Retrocopy | FGWGTGSGLTS<LLMELQSVDYGEQYKLEWSIYPAP*VSTAVFEPYNSILTTHTTMEHSDCAFMVDNEAI |
Parental | YDICRRNLDIERPTYTNLNRLISQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAE |
...C.R.LD.ERPTYTNLNRLI.Q.VSS..ASLR....LNVDLTEF.TNLV.YP.....LATYAPVISAE | |
Retrocopy | CESCHRTLDTERPTYTNLNRLIGQLVSSVIASLRLMD-LNVDLTEF*TNLVTYPCFCLLLATYAPVISAE |
Parental | K-AYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCLLYRGDVVPKDVNAAIATIKTKRSIQFVDWCP |
K.AY.EQ.SVAEI..ACFEPANQMVKCDPRHGKYMACCLL...DVVPKDVNAAIAT.KTK..IQFV.WCP | |
Retrocopy | K>AYREQFSVAEIVHACFEPANQMVKCDPRHGKYMACCLLCHSDVVPKDVNAAIATVKTKHTIQFVHWCP |
Parental | TGFKVGINYQPPTVVPGGDLAK---VQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEE |
TGFKV..NYQPP.VVPGG.LAK.....RAVCMLSNTTAIAEAWARLDHKFDL..AKRAF.H.Y.GEGMEE | |
Retrocopy | TGFKVDLNYQPPIVVPGGNLAKALCALRAVCMLSNTTAIAEAWARLDHKFDLTCAKRAFLH*YIGEGMEE |
Parental | GEFSEAREDMAALEKDYEEVGVDSVEGEGEEEGE |
GE.SEARED.AALEKDYEEVGVDSVEGEGEEEGE | |
Retrocopy | GE*SEAREDLAALEKDYEEVGVDSVEGEGEEEGE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000006872 | 4 retrocopies | |
Canis familiaris | ENSCAFG00000008640 | 8 retrocopies | |
Choloepus hoffmanni | ENSCHOG00000008444 | 2 retrocopies | |
Cavia porcellus | ENSCPOG00000013016 | 1 retrocopy | |
Felis catus | ENSFCAG00000027011 | 1 retrocopy | |
Felis catus | ENSFCAG00000028689 | 3 retrocopies | |
Loxodonta africana | ENSLAFG00000010021 | 1 retrocopy | |
Microcebus murinus | ENSMICG00000000804 | 1 retrocopy | |
Microcebus murinus | ENSMICG00000017551 | 3 retrocopies |
retro_mmur_144 , retro_mmur_705, retro_mmur_885,
|
Myotis lucifugus | ENSMLUG00000002622 | 4 retrocopies | |
Otolemur garnettii | ENSOGAG00000009435 | 1 retrocopy | |
Tupaia belangeri | ENSTBEG00000001671 | 1 retrocopy | |
Tarsius syrichta | ENSTSYG00000013266 | 7 retrocopies | |
Tursiops truncatus | ENSTTRG00000004794 | 1 retrocopy |