RetrogeneDB ID: | retro_tsyr_6 | ||
Retrocopylocation | Organism: | Tarsier (Tarsius syrichta) | |
Coordinates: | scaffold_50069:1341..2685(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSTSYG00000013970 | |
Aliases: | None | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSTSYG00000013266 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 94.44 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | RECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKHVPRAVFVDLE |
RECISIHVGQAGVQIGNACWELYCLEHGIQP.GQMPSDKT.GGGDDSFNTFFS.TGAGKHVPRAVFVDLE | |
Retrocopy | RECISIHVGQAGVQIGNACWELYCLEHGIQPNGQMPSDKTTGGGDDSFNTFFSKTGAGKHVPRAVFVDLE |
Parental | PTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLDRIRKLADQCTGLQGFLVFHSF |
PTVID.VRTG.YRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVL.RIRKLADQCTGLQGFLVFHSF | |
Retrocopy | PTVIDKVRTGIYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLNRIRKLADQCTGLQGFLVFHSF |
Parental | GGGTG-GFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYD |
GGG.G.GFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYD | |
Retrocopy | GGGSGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYD |
Parental | ICRRNLDIERPTYTNLNRLISQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKA |
ICRRNLDIE..TYTNLN.LISQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKA | |
Retrocopy | ICRRNLDIECLTYTNLN-LISQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKA |
Parental | YHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCLLYRGDVVPKDVNAAIATIKTKRSIQFVDWCPTGF |
YHEQL.VAEITNACFEP.NQMVKCDP.HGKYMACCLL.RGDVVPKD.NAAIATIKTK..IQFVDWCPTGF | |
Retrocopy | YHEQLTVAEITNACFEPTNQMVKCDPHHGKYMACCLLFRGDVVPKDINAAIATIKTKCTIQFVDWCPTGF |
Parental | KVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEA |
KVGINYQPPTVVPGGDLAKVQRAVCMLSNTTA.AEAWARLDHKF.LMYAK.AFVHWYVGEGMEEGEFSEA | |
Retrocopy | KVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAVAEAWARLDHKFHLMYAKHAFVHWYVGEGMEEGEFSEA |
Parental | REDMAALEKDYEEVGVDSVEGEGEEEGEEY |
REDMAALEKDYEEVG.DSV..EGE.EGEEY | |
Retrocopy | REDMAALEKDYEEVGADSV--EGEDEGEEY |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000006872 | 4 retrocopies | |
Canis familiaris | ENSCAFG00000008640 | 8 retrocopies | |
Choloepus hoffmanni | ENSCHOG00000008444 | 2 retrocopies | |
Cavia porcellus | ENSCPOG00000013016 | 1 retrocopy | |
Felis catus | ENSFCAG00000027011 | 1 retrocopy | |
Felis catus | ENSFCAG00000028689 | 3 retrocopies | |
Loxodonta africana | ENSLAFG00000010021 | 1 retrocopy | |
Microcebus murinus | ENSMICG00000017551 | 3 retrocopies | |
Myotis lucifugus | ENSMLUG00000002622 | 4 retrocopies | |
Otolemur garnettii | ENSOGAG00000009435 | 1 retrocopy | |
Tupaia belangeri | ENSTBEG00000001671 | 1 retrocopy | |
Tarsius syrichta | ENSTSYG00000013266 | 7 retrocopies |
retro_tsyr_1014, retro_tsyr_1278, retro_tsyr_1281, retro_tsyr_1679, retro_tsyr_1834, retro_tsyr_243, retro_tsyr_6 ,
|
Tursiops truncatus | ENSTTRG00000004794 | 1 retrocopy |