RetrogeneDB ID: | retro_tsyr_1281 | ||
Retrocopylocation | Organism: | Tarsier (Tarsius syrichta) | |
Coordinates: | scaffold_37969:2491..3809(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSTSYG00000013266 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 72.06 % |
Parental protein coverage: | 99.78 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 2 |
Parental | ECISIHVGQ-AGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKHVPRAVFVDLE |
ECISIHVG..A..Q.GNA.WELYCLEH.IQPDGQ.PSDKT.GGGDDSFN.FFSE.G.G.HV.RA...DLE | |
Retrocopy | ECISIHVGR<AASQTGNAYWELYCLEHNIQPDGQLPSDKTTGGGDDSFNIFFSEMGTGRHVSRAALADLE |
Parental | PTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLDRIRKLADQCTGLQGFLVFHSF |
...ID.VRTG.Y.QLFHPEQLITGKE.AANNYAR.HYT.GKE..DLVLDRI.KLADQCTGLQ.FL.FHS. | |
Retrocopy | AMAIDDVRTGIYCQLFHPEQLITGKEVAANNYAREHYTTGKEVVDLVLDRICKLADQCTGLQRFLGFHSY |
Parental | GGGTGGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDI |
GG..G..........S.DY.KKS.LE.SIYPAP..STAVVEPY.SILT....L..SDCAFMVDNEAI.DI | |
Retrocopy | GGRIGSGLPPC*WNVSEDYDKKSRLELSIYPAPRDSTAVVEPYYSILT---ILDPSDCAFMVDNEAIHDI |
Parental | CRRNLDIERPTYTNLNRLISQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAY |
C.RNL.IE.PTYTNLNRLISQI.SS..ASLRFDGAL.V.LT.....L.P..RIHFPL.TYAP.IS.EK.Y | |
Retrocopy | CHRNLTIEHPTYTNLNRLISQIMSSSIASLRFDGALHVELTD----LMPCLRIHFPLPTYAPIISTEKTY |
Parental | HEQLSVAEITNACFEPANQMVKCDPRHGKYMACCLLYRGDVVPKDVNAAIATIKTKRSIQFVD-W-CPTG |
H.QL.VAE.TNACFE.ANQMVKCDP.....MACCLLY.GD..PKD.N.AIATIKTK...QFV..W..PTG | |
Retrocopy | HDQLTVAETTNACFEAANQMVKCDPHPSQCMACCLLYHGDLGPKDGNTAIATIKTKHTTQFVGCW<VPTG |
Parental | FKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSE |
FKVGINYQPPTV.PGGDLA.VQR.VCML..TTA.AEAWA.LDHK.DLM.AK..F.H.YV..GMEEG.FSE | |
Retrocopy | FKVGINYQPPTVAPGGDLA*VQRSVCMLGDTTAVAEAWAHLDHKCDLMDAKHGFLHGYVSKGMEEGGFSE |
Parental | AREDMAALEKDYEEVGVDSVEGEGEEEGEEY |
A.EDMAALE..YE.VG.D....EG..EGEEY | |
Retrocopy | APEDMAALENYYEDVGADN--AEGKDEGEEY |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000006872 | 4 retrocopies | |
Canis familiaris | ENSCAFG00000008640 | 8 retrocopies | |
Choloepus hoffmanni | ENSCHOG00000008444 | 2 retrocopies | |
Cavia porcellus | ENSCPOG00000013016 | 1 retrocopy | |
Felis catus | ENSFCAG00000027011 | 1 retrocopy | |
Felis catus | ENSFCAG00000028689 | 3 retrocopies | |
Loxodonta africana | ENSLAFG00000010021 | 1 retrocopy | |
Microcebus murinus | ENSMICG00000017551 | 3 retrocopies | |
Myotis lucifugus | ENSMLUG00000002622 | 4 retrocopies | |
Otolemur garnettii | ENSOGAG00000009435 | 1 retrocopy | |
Tupaia belangeri | ENSTBEG00000001671 | 1 retrocopy | |
Tarsius syrichta | ENSTSYG00000013266 | 7 retrocopies |
retro_tsyr_1014, retro_tsyr_1278, retro_tsyr_1281 , retro_tsyr_1679, retro_tsyr_1834, retro_tsyr_243, retro_tsyr_6,
|
Tursiops truncatus | ENSTTRG00000004794 | 1 retrocopy |