RetrogeneDB ID: | retro_mluc_270 | ||
Retrocopylocation | Organism: | Microbat (Myotis lucifugus) | |
Coordinates: | GL429782:2892187..2893537(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSMLUG00000023902 | |
Aliases: | None | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | TUBA1B | ||
Ensembl ID: | ENSMLUG00000002622 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 90.13 % |
Parental protein coverage: | 99.11 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | RECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKHVPRAVFVDLE |
RECISIH.GQAGVQ.G.ACWELYCLEHGIQPDG.MPSDK.IG.GD.SFNTFFSETGAGKHVPRAVFVDLE | |
Retrocopy | RECISIHIGQAGVQVGSACWELYCLEHGIQPDGHMPSDKMIGMGDNSFNTFFSETGAGKHVPRAVFVDLE |
Parental | PTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLDRIRKLADQCTGLQGFLVFHSF |
PTVIDE.R.GTY.QLFHPEQLITGKE.AANNYARGHYTIG.EIIDLVLD.IRK.ADQCTGLQGFL.FHSF | |
Retrocopy | PTVIDEIRSGTYHQLFHPEQLITGKEYAANNYARGHYTIGREIIDLVLDQIRKVADQCTGLQGFLIFHSF |
Parental | GGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYD |
GGGTGSGFTSLL...LS.DYGKKSKL.FSIYPAPQVSTAVVEPYNSI.TTH.TLEHSDC.FMVDNEAIYD | |
Retrocopy | GGGTGSGFTSLLIKHLSADYGKKSKLQFSIYPAPQVSTAVVEPYNSIFTTHATLEHSDCVFMVDNEAIYD |
Parental | ICRRNLDIERPTYTNLNRLISQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKA |
IC.RNL.IE.PTYTNLNRLISQIVSSITASLRFDGALNVDL.EFQTNLVPYPRIHFPLATYAPVISAEKA | |
Retrocopy | ICLRNLNIEHPTYTNLNRLISQIVSSITASLRFDGALNVDLIEFQTNLVPYPRIHFPLATYAPVISAEKA |
Parental | YHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCLLYRGDVVPKDVNAAIATIKTKRSIQFVDWCPTGF |
YHEQL.VAE.T.ACFEPANQM.KC.PR.GKYMACCL.YRGDVVPKD.NAAIATIKTKR.IQFVDWCPTGF | |
Retrocopy | YHEQLTVAELTQACFEPANQMLKCNPRYGKYMACCLFYRGDVVPKDINAAIATIKTKRTIQFVDWCPTGF |
Parental | KVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEA |
KVGINYQPPTVVPGGDLA.VQRAVCMLSNTTA.AEAWARLD.KFDLMYAKRAFVHWYVGEGMEEGEF.EA | |
Retrocopy | KVGINYQPPTVVPGGDLARVQRAVCMLSNTTAVAEAWARLDYKFDLMYAKRAFVHWYVGEGMEEGEFCEA |
Parental | REDMAALEKDYEEVGVDSVEGEGEEE |
REDMAALEKDYEEVG.DS.EGE.E.E | |
Retrocopy | REDMAALEKDYEEVGADSAEGEDEDE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000006872 | 4 retrocopies | |
Canis familiaris | ENSCAFG00000008640 | 8 retrocopies | |
Choloepus hoffmanni | ENSCHOG00000008444 | 2 retrocopies | |
Cavia porcellus | ENSCPOG00000013016 | 1 retrocopy | |
Felis catus | ENSFCAG00000027011 | 1 retrocopy | |
Felis catus | ENSFCAG00000028689 | 3 retrocopies | |
Loxodonta africana | ENSLAFG00000010021 | 1 retrocopy | |
Microcebus murinus | ENSMICG00000017551 | 3 retrocopies | |
Myotis lucifugus | ENSMLUG00000002622 | 4 retrocopies | |
Otolemur garnettii | ENSOGAG00000009435 | 1 retrocopy | |
Tupaia belangeri | ENSTBEG00000001671 | 1 retrocopy | |
Tarsius syrichta | ENSTSYG00000013266 | 7 retrocopies | |
Tursiops truncatus | ENSTTRG00000004794 | 1 retrocopy |