RetrogeneDB ID: | retro_tsyr_1014 | ||
Retrocopylocation | Organism: | Tarsier (Tarsius syrichta) | |
Coordinates: | scaffold_27597:10107..11438(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSTSYG00000013266 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 87.02 % |
Parental protein coverage: | 98.89 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 3 |
Parental | ECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKHVPRAVFVDLEP |
.CISIHVGQAGVQIGNACWE.YCL..GIQPD.QMPSDKTIGG.DDSFNTFFSETGAGKHVPRAVFV.LEP | |
Retrocopy | DCISIHVGQAGVQIGNACWEFYCLKRGIQPDCQMPSDKTIGGIDDSFNTFFSETGAGKHVPRAVFVNLEP |
Parental | TVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLDRIRKLADQCTGLQGFLVFHSFG |
.VIDEVR.GTYRQLFHPEQLITGKEDA..NYA.GHYTIGK.IIDLVL.RIRKL.DQCTGLQGFLVFHSFG | |
Retrocopy | MVIDEVRIGTYRQLFHPEQLITGKEDASKNYA*GHYTIGKQIIDLVLNRIRKLTDQCTGLQGFLVFHSFG |
Parental | GGTGGFTSLLMER-LSVDYGKKSKLEFSIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDI |
GGTG.....L.....S.DYGKKSKLEFSIY..PQVSTAVVEPY.SILTTHTTLEHSDCAF.VDNE.IYDI | |
Retrocopy | GGTGSGFISLLMK>VSLDYGKKSKLEFSIYLPPQVSTAVVEPYDSILTTHTTLEHSDCAFIVDNEVIYDI |
Parental | CRRNLDIERPTYTNLNRL-ISQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKA |
C.RNLDIE.PTYTNLN.L.ISQ.V.SITASLRFDGALNVDLTEFQTNLVPYPRI.FPLATYA.VISAEKA | |
Retrocopy | CCRNLDIECPTYTNLNPL<ISQVVFSITASLRFDGALNVDLTEFQTNLVPYPRIYFPLATYALVISAEKA |
Parental | YHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCLLYRGDVVPKDVNAAIATIKTKRSIQFVDWCPTGF |
YH.QLSVAEITNACFEPANQMVKCDPRHGKYM.CCL.Y.GDV.PKD.N.AIAT.KTK.SIQFVDWCPTGF | |
Retrocopy | YHKQLSVAEITNACFEPANQMVKCDPRHGKYMTCCLWYCGDVAPKDINVAIATTKTKHSIQFVDWCPTGF |
Parental | KVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHW-YVGEGMEEGEFSE |
KV.INYQPPT..PGGDLAKVQRAVCMLSNTTAIAEAWA.L..KFDLMYAK.AFVHW..VGEGMEEGEFSE | |
Retrocopy | KVNINYQPPTMIPGGDLAKVQRAVCMLSNTTAIAEAWAHLNCKFDLMYAKCAFVHW<VVGEGMEEGEFSE |
Parental | AREDMAALEKDYEEVGVDSVEGEGEEE |
AREDMAALEKDYEEVGVDSVEGEGEE. | |
Retrocopy | AREDMAALEKDYEEVGVDSVEGEGEEK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000006872 | 4 retrocopies | |
Canis familiaris | ENSCAFG00000008640 | 8 retrocopies | |
Choloepus hoffmanni | ENSCHOG00000008444 | 2 retrocopies | |
Cavia porcellus | ENSCPOG00000013016 | 1 retrocopy | |
Felis catus | ENSFCAG00000027011 | 1 retrocopy | |
Felis catus | ENSFCAG00000028689 | 3 retrocopies | |
Loxodonta africana | ENSLAFG00000010021 | 1 retrocopy | |
Microcebus murinus | ENSMICG00000017551 | 3 retrocopies | |
Myotis lucifugus | ENSMLUG00000002622 | 4 retrocopies | |
Otolemur garnettii | ENSOGAG00000009435 | 1 retrocopy | |
Tupaia belangeri | ENSTBEG00000001671 | 1 retrocopy | |
Tarsius syrichta | ENSTSYG00000013266 | 7 retrocopies |
retro_tsyr_1014 , retro_tsyr_1278, retro_tsyr_1281, retro_tsyr_1679, retro_tsyr_1834, retro_tsyr_243, retro_tsyr_6,
|
Tursiops truncatus | ENSTTRG00000004794 | 1 retrocopy |