Parental gene:

TUBA1B, ENSCPOG00000013016

Aliases:None
Description:None
Organism:Guinea Pig (Cavia porcellus)
Coordinates:scaffold_9:50409379..50439914(+)


>ENSCPOG00000013016
CAGCGTGAGTGCATCTCCATCCACGTTGGCCAGGCTGGTGTCCAGATTGGCAACGCCTGCTGGGAGCTCTACTGCCTGGA
ACATGGCATTCAGCCCGATGGCCAGATGCCAAGTGACAAGACCATTGGGGGAGGAGATGACTCCTTCAACACCTTCTTCA
GTGAGACTGGTGCTGGCAAACATGTGCCCAGGGCAGTGTTTGTAGACCTGGAACCCACAGTCATTGATGAAGTGCGTACT
GGTACCTACCGCCAGCTGTTCCACCCTGAGCAGCTCATCACAGGCAAGGAAGATGCTGCCAATAACTATGCCCGTGGGCA
CTACACCATTGGCAAGGAGATCATTGACCTTGTCTTGGACCGAATTCGGAAACTGGCTGACCAGTGCACAGGTCTGCAGG
GCTTCCTGGTTTTCCACAGCTTTGGTGGGGGCACTGGCTCTGGGTTCACCTCCCTGCTGATGGAGCGCCTCTCCGTTGAC
TACGGCAAGAAGTCCAAGCTCGAGTTCTCCATTTACCCAGCCCCCCAGGTCTCCACAGCTGTTGTAGAGCCCTACAACTC
CATCCTCACCACCCACACCACCCTGGAGCACTCTGATTGTGCCTTCATGGTAGACAACGAGGCCATCTATGACATCTGTC
GTAGAAACCTTGATATTGAGCGCCCCACCTACACTAACCTGAACCGCCTTATTAGCCAGATTGTGTCTTCCATCACTGCT
TCCCTCAGGTTTGATGGAGCCCTGAATGTTGATCTGACAGAATTCCAGACCAACCTGGTACCCTACCCCCGCATCCACTT
CCCTCTGGCCACATATGCCCCTGTCATCTCTGCTGAGAAAGCCTACCATGAACAGCTCTCTGTAGCAGAGATCACCAATG
CCTGCTTTGAGCCAGCCAACCAGATGGTGAAATGTGACCCTCGCCATGGTAAATACATGGCTTGTTGCCTGTTGTACCGT
GGTGATGTGGTCCCCAAAGATGTTAATGCTGCCATTGCCACCATCAAGACCAAGCGCAGCATCCAGTTTGTGGACTGGTG
CCCCACTGGCTTCAAAGTTGGCATTAATTACCAGCCTCCTACTGTGGTTCCTGGTGGAGACCTGGCCAAGGTGCAGAGGG
CTGTGTGCATGCTGAGCAACACCACAGCCATCGCTGAGGCCTGGGCTCGCCTGGACCATAAGTTTGATCTGATGTATGCC
AAGCGTGCCTTTGTTCACTGGTACGTGGGTGAGGGGATGGAGGAGGGGGAGTTTTCTGAGGCCCGGGAGGACATGGCTGC
CCTTGAGAAGGATTATGAGGAGGTTGGTGTGGATTCTGTTGAAGGAGAGGGCGAAGAAGAAGGAGAGGAGTACTAG

Library Parental gene expression (RPM)
SRP017611_liver 58 .94 RPM
SRP017611_kidney 123 .01 RPM
SRP017611_brain 523 .34 RPM
SRP040447_lung 693 .62 RPM
SRP040447_skeletal_muscle 217 .96 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000006872 ortholog_one2one 4 retrogenes
retro_amel_1162, retro_amel_1367, retro_amel_1387, retro_amel_1895,
Canis familiaris ENSCAFG00000008640 ortholog_one2one 8 retrogenes
retro_cfam_1481, retro_cfam_1751, retro_cfam_1895, retro_cfam_1917, retro_cfam_1979, retro_cfam_2000, retro_cfam_463, retro_cfam_926,
Choloepus hoffmanni ENSCHOG00000008444 possible_ortholog 2 retrogenes
retro_chof_179, retro_chof_360,
Felis catus ENSFCAG00000027011 ortholog_one2one 1 retrogene
retro_fcat_588,
Felis catus ENSFCAG00000028689 possible_ortholog 3 retrogenes
retro_fcat_1802, retro_fcat_254, retro_fcat_798,
Loxodonta africana ENSLAFG00000010021 ortholog_one2one 1 retrogene
retro_lafr_326,
Microcebus murinus ENSMICG00000017551 ortholog_one2one 3 retrogenes
retro_mmur_144, retro_mmur_705, retro_mmur_885,
Myotis lucifugus ENSMLUG00000002622 ortholog_one2one 4 retrogenes
retro_mluc_154, retro_mluc_186, retro_mluc_234, retro_mluc_270,
Otolemur garnettii ENSOGAG00000009435 possible_ortholog 1 retrogene
retro_ogar_240,
Tupaia belangeri ENSTBEG00000001671 ortholog_one2one 1 retrogene
retro_tbel_3700,
Tarsius syrichta ENSTSYG00000013266 ortholog_one2one 7 retrogenes
retro_tsyr_1014, retro_tsyr_1278, retro_tsyr_1281, retro_tsyr_1679, retro_tsyr_1834, retro_tsyr_243, retro_tsyr_6,
Tursiops truncatus ENSTTRG00000004794 ortholog_one2one 1 retrogene
retro_ttru_407,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cpor_96 93.92 98.45
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Download FASTA sequences of all ENSCPOG00000013016 retrocopies