RetrogeneDB ID: | retro_cfam_1917 | ||
Retrocopylocation | Organism: | Dog (Canis familiaris) | |
Coordinates: | 8:47117791..47118857(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSCAFG00000028983 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSCAFG00000008640 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 89.39 % |
Parental protein coverage: | 79.16 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 1 |
Parental | ECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKHVPRAVFVDLEP |
ECISIHVGQAGV.IG.ACWELYCLEH.IQP.GQMPSDKTIGGGDDSFNTFFSETG.GKHVPR.VFVDLEP | |
Retrocopy | ECISIHVGQAGVRIGSACWELYCLEHSIQPNGQMPSDKTIGGGDDSFNTFFSETGTGKHVPRVVFVDLEP |
Parental | TVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLDRIRKLADQCTGLQGFLVFHSFG |
TVIDEV.T.TYRQLFHPEQLI.GKEDAANNYA.GHYTIGK.IIDLVLD.IRKLADQC.GLQG.LVFHSFG | |
Retrocopy | TVIDEVHTSTYRQLFHPEQLIIGKEDAANNYA*GHYTIGK-IIDLVLD*IRKLADQCMGLQG-LVFHSFG |
Parental | GGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDI |
G.TGSGFTSLLME.LSVDYGKKS.L.FSIYP.PQVSTAVVEPYNSILTTHTTLEHSDCAF.VDNE.IYDI | |
Retrocopy | G*TGSGFTSLLMECLSVDYGKKSNLDFSIYPTPQVSTAVVEPYNSILTTHTTLEHSDCAFTVDNEVIYDI |
Parental | CRRNLDIERPTYTNLNRLISQIVSS-ITASLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKA |
CR.N.DIE.PTYTNLNRLI.QIVSS.ITASLRFDGALNV.L.EFQTNLV.YP.IHFPLATYAPVISAEKA | |
Retrocopy | CRSNFDIESPTYTNLNRLIGQIVSS>ITASLRFDGALNVELMEFQTNLVSYPCIHFPLATYAPVISAEKA |
Parental | YHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCLLYRGDVVPKDVNAAIATIKTKRSIQFVDWCPTGF |
YHEQLSVAEIT.ACFEPANQM.K.DPRHGKYMACCLLYRGDVVPKDVNAAIATIKTKR.IQFVDWCPTGF | |
Retrocopy | YHEQLSVAEITSACFEPANQMEKRDPRHGKYMACCLLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGF |
Parental | KVGINYQP |
KVG....P | |
Retrocopy | KVGMSLVP |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012049_cerebellum | 0 .04 RPM | 465 .89 RPM |
SRP017611_brain | 0 .48 RPM | 647 .84 RPM |
SRP017611_kidney | 0 .73 RPM | 186 .36 RPM |
SRP017611_liver | 0 .87 RPM | 50 .18 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000006872 | 4 retrocopies | |
Canis familiaris | ENSCAFG00000005248 | 1 retrocopy | |
Canis familiaris | ENSCAFG00000008640 | 8 retrocopies |
retro_cfam_1481, retro_cfam_1751, retro_cfam_1895, retro_cfam_1917 , retro_cfam_1979, retro_cfam_2000, retro_cfam_463, retro_cfam_926,
|
Canis familiaris | ENSCAFG00000008661 | 2 retrocopies | |
Canis familiaris | ENSCAFG00000010412 | 1 retrocopy | |
Choloepus hoffmanni | ENSCHOG00000008444 | 2 retrocopies | |
Cavia porcellus | ENSCPOG00000013016 | 1 retrocopy | |
Felis catus | ENSFCAG00000027011 | 1 retrocopy | |
Felis catus | ENSFCAG00000028689 | 3 retrocopies | |
Loxodonta africana | ENSLAFG00000010021 | 1 retrocopy | |
Microcebus murinus | ENSMICG00000017551 | 3 retrocopies | |
Myotis lucifugus | ENSMLUG00000002622 | 4 retrocopies | |
Otolemur garnettii | ENSOGAG00000009435 | 1 retrocopy | |
Tupaia belangeri | ENSTBEG00000001671 | 1 retrocopy | |
Tarsius syrichta | ENSTSYG00000013266 | 7 retrocopies | |
Tursiops truncatus | ENSTTRG00000004794 | 1 retrocopy |