RetrogeneDB ID: | retro_tsyr_1278 | ||
Retrocopylocation | Organism: | Tarsier (Tarsius syrichta) | |
Coordinates: | scaffold_377910:0..1017(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSTSYG00000013266 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 83.92 % |
Parental protein coverage: | 75.06 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 0 |
Parental | ECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKHVPRAVFVDLEP |
ECISIHV.QAGVQI.NACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSE.GAGKHVPRAVFVDLEP | |
Retrocopy | ECISIHVCQAGVQISNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSEMGAGKHVPRAVFVDLEP |
Parental | TVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLDRIRKLADQCTGLQGFLVFHSFG |
TVIDE..TGTY..LFHPEQLITGKEDAANNYA.G..TIG.EII..VLDRI.KL.DQCTGLQGFLVFHS.G | |
Retrocopy | TVIDEIHTGTYCLLFHPEQLITGKEDAANNYA*GNSTIGMEIIGFVLDRIHKLVDQCTGLQGFLVFHSLG |
Parental | GGTGG-FTSLLMERLSVDYGKKSKLEFSIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDI |
GG.G..FTSL.ME.LSVDYGKKSKLEFSIY.APQVSTAVVEP.NSILTT....EHSDCAFMVDNEAI..I | |
Retrocopy | GGAGSRFTSLPMECLSVDYGKKSKLEFSIYSAPQVSTAVVEPCNSILTTP---EHSDCAFMVDNEAISNI |
Parental | CRRNLDIERPTYTNLNRLISQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAY |
CRRN.DIE.PTYTNLNRLI.QIV.SITASL.FDG.LNVDLTEFQTNLVPYPRIHF.LATYAPVIS.EKA. | |
Retrocopy | CRRNFDIEHPTYTNLNRLIGQIVCSITASLTFDGTLNVDLTEFQTNLVPYPRIHFSLATYAPVISTEKAH |
Parental | HE----QLSVAEITNACFEPANQMVKCDPRHGKYMACCLLYRGDVVPKDVNAAIATIKTKRS |
.E.....L.VAEIT.ACFEP.NQMVKCDP.HGKYMACCLL...DVV.KD..AAIATIKTKR. | |
Retrocopy | PE*P*TSLPVAEITSACFEPVNQMVKCDPCHGKYMACCLLCCADVVSKDLSAAIATIKTKRT |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000006872 | 4 retrocopies | |
Canis familiaris | ENSCAFG00000008640 | 8 retrocopies | |
Choloepus hoffmanni | ENSCHOG00000008444 | 2 retrocopies | |
Cavia porcellus | ENSCPOG00000013016 | 1 retrocopy | |
Felis catus | ENSFCAG00000027011 | 1 retrocopy | |
Felis catus | ENSFCAG00000028689 | 3 retrocopies | |
Loxodonta africana | ENSLAFG00000010021 | 1 retrocopy | |
Microcebus murinus | ENSMICG00000017551 | 3 retrocopies | |
Myotis lucifugus | ENSMLUG00000002622 | 4 retrocopies | |
Otolemur garnettii | ENSOGAG00000009435 | 1 retrocopy | |
Tupaia belangeri | ENSTBEG00000001671 | 1 retrocopy | |
Tarsius syrichta | ENSTSYG00000013266 | 7 retrocopies |
retro_tsyr_1014, retro_tsyr_1278 , retro_tsyr_1281, retro_tsyr_1679, retro_tsyr_1834, retro_tsyr_243, retro_tsyr_6,
|
Tursiops truncatus | ENSTTRG00000004794 | 1 retrocopy |