RetrogeneDB ID: | retro_amel_1851 | ||
Retrocopylocation | Organism: | Panda (Ailuropoda melanoleuca) | |
Coordinates: | GL194848.1:42715..43193(+) | ||
Located in intron of: | ENSAMEG00000003304 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | ATP5G2 | ||
Ensembl ID: | ENSAMEG00000000619 | ||
Aliases: | None | ||
Description: | ATP synthase, H+ transporting, mitochondrial Fo complex, subunit C2 (subunit 9) [Source:HGNC Symbol;Acc:842] |
Percent Identity: | 75.61 % |
Parental protein coverage: | 82.23 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 2 |
Parental | APLCLLCTGSRLSATA-PHPLKMYAC-AKFVSTPFLAKSTSQLLSRSLSAVVLKPPETLTDESLSSLAAP |
AP.CLLCTGS...ATA.P..L......A..VSTP.L....SQLLS.SLSAVVLKPPETLTD.S....AAP | |
Retrocopy | APRCLLCTGSSSAATA<PSTLRTHTL<AQLVSTPALVGTDSQLLSPSLSAVVLKPPETLTDGS-RGWAAP |
Parental | RPLTSLIPSRSFQTSAISRDIDTAAKFIGAGAATVGVAGSGAGIGTVFGSLIIGYARNPSLKQQLFSYAI |
RPLTSLI.SRS...SAISRD.DTAA...GAGAATVGVAGSGAG.GTV.GSLI.GYARNPS.KQQL.SYAI | |
Retrocopy | RPLTSLILSRSSRGSAISRDTDTAAEVTGAGAATVGVAGSGAGTGTVSGSLITGYARNPSRKQQL-SYAI |
Parental | LGFALSEAMGLFCLMVAFLILFAM |
LG.ALSEAMGLFCLMVAFLILFAM | |
Retrocopy | LGSALSEAMGLFCLMVAFLILFAM |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |