RetrogeneDB ID: | retro_amel_770 | ||
Retrocopylocation | Organism: | Panda (Ailuropoda melanoleuca) | |
Coordinates: | GL192622.1:1037..1504(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | ATP5G2 | ||
Ensembl ID: | ENSAMEG00000000619 | ||
Aliases: | None | ||
Description: | ATP synthase, H+ transporting, mitochondrial Fo complex, subunit C2 (subunit 9) [Source:HGNC Symbol;Acc:842] |
Percent Identity: | 71.25 % |
Parental protein coverage: | 80.71 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | SRSPAPLCLLCTGSRLSATAPHPLKMYACAKFVSTPFLAKSTSQLLSRSLSAVVLKPPETLTDESLSSLA |
.R...PL..LCTGS...AT.PHPLKM..CA.F.S.PFL..STSQ..SRSLSAVVLK..ET..DESLSSLA | |
Retrocopy | TREAVPLSFLCTGSSSPATVPHPLKM*GCAQFISSPFLGRSTSQ-VSRSLSAVVLKTLETPIDESLSSLA |
Parental | APRPLTSLIP-SRSFQTSAISRDIDTAAKFIGAGAATVGVAGSGAGIGTVFGSLIIGYARNPSLKQQLFS |
A..PLTS.I..S..FQTSAISRDI..AAKF..AGA.TVGVAGSGA..G..FGSLIIGY.RN.SLKQQLF. | |
Retrocopy | ALCPLTSFIL<SHNFQTSAISRDIHRAAKFTVAGAVTVGVAGSGARTGE-FGSLIIGYVRNQSLKQQLF- |
Parental | YAILGFALSEAMGLFCLMVA |
YAILGFAL.EAM.LF.L.VA | |
Retrocopy | YAILGFALWEAMRLFYLLVA |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |