RetrogeneDB ID: | retro_itri_785 | ||
Retrocopylocation | Organism: | Squirrel (Ictidomys tridecemlineatus) | |
Coordinates: | JH393322.1:6497046..6497654(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL15 | ||
Ensembl ID: | ENSSTOG00000011153 | ||
Aliases: | None | ||
Description: | ribosomal protein L15 [Source:HGNC Symbol;Acc:10306] |
Percent Identity: | 75.24 % |
Parental protein coverage: | 99.02 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 3 |
Parental | AYKYIQELWRKKQSDVMRFLLRVRCWQYRQLSALHRAPRPTRPDKARRLGYKA-KQGYVIYRIRVRRGGR |
AYKYI.ELWRK.QSDVM.FLLRV.CWQY..LSA.HRAP.PTRPDKA.RLGY...KQGY.IYRI.VR.GG. | |
Retrocopy | AYKYI*ELWRKEQSDVMHFLLRVCCWQYHKLSAPHRAPHPTRPDKA*RLGYRS<KQGYIIYRIPVRPGGG |
Parental | KRPVPKGAT-YGKPVHHGVNQLKFARSLQSV-AEERAGRH-CGALRVLNSYWVGEDSTYKFFEVILIDPF |
K...PKGAT.YGKPVHHGVNQLKFA....S....E...RH..GALRVLNSYWV.EDSTYKFFEVI.IDPF | |
Retrocopy | KHTFPKGAT>YGKPVHHGVNQLKFA*KAFSL<VAEEGARHQYGALRVLNSYWVDEDSTYKFFEVIFIDPF |
Parental | HKAIRRNPDTQWITKPVHKHREMRGLTSAGRKSRGLGKGHKFHHTIGGSRRAAWRRRNTLQLHRYR |
HKAIRRNPDTQW.T..VHK.REM..LT.AG.KS.GLGKGHKFHHTIG.S..AA.RR..TLQLH.YR | |
Retrocopy | HKAIRRNPDTQWVTTLVHKLREMPSLTFAGHKSHGLGKGHKFHHTIGSSCHAALRRHDTLQLHHYR |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000033080 | 2 retrocopies | |
Cavia porcellus | ENSCPOG00000002253 | 4 retrocopies | |
Felis catus | ENSFCAG00000026237 | 6 retrocopies | |
Gorilla gorilla | ENSGGOG00000024274 | 13 retrocopies | |
Myotis lucifugus | ENSMLUG00000013809 | 15 retrocopies | |
Macaca mulatta | ENSMMUG00000006353 | 1 retrocopy | |
Monodelphis domestica | ENSMODG00000014880 | 3 retrocopies | |
Mustela putorius furo | ENSMPUG00000012148 | 7 retrocopies | |
Mus musculus | ENSMUSG00000012405 | 2 retrocopies | |
Oryctolagus cuniculus | ENSOCUG00000010961 | 2 retrocopies | |
Otolemur garnettii | ENSOGAG00000013056 | 13 retrocopies | |
Procavia capensis | ENSPCAG00000011995 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000008140 | 17 retrocopies | |
Sus scrofa | ENSSSCG00000028079 | 5 retrocopies | |
Ictidomys tridecemlineatus | ENSSTOG00000011153 | 4 retrocopies | |
Tursiops truncatus | ENSTTRG00000007244 | 5 retrocopies |