RetrogeneDB ID: | retro_cpor_620 | ||
Retrocopylocation | Organism: | Guinea Pig (Cavia porcellus) | |
Coordinates: | scaffold_20:10505514..10505958(+) | ||
Located in intron of: | ENSCPOG00000011565 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL15 | ||
Ensembl ID: | ENSCPOG00000002253 | ||
Aliases: | None | ||
Description: | Ribosomal protein L15 [Source:UniProtKB/TrEMBL;Acc:H0UY44] |
Percent Identity: | 72.97 % |
Parental protein coverage: | 72.55 % |
Number of stop codons detected: | 4 |
Number of frameshifts detected | 0 |
Parental | MGAYKYIQELWRKKQSDVMRFLLRVRCWQYRQLSALHRAPRPTRPDKARRLGYKAKQGYVIYRIRVRRGG |
M.AY.YIQELWRK.QS..M.FLLRV.CW.YR.LS.LHRAP.PT..DKA.RL..KAK.GYVI.RI.V..GG | |
Retrocopy | MDAY*YIQELWRKNQSTLMCFLLRVCCWHYRHLSVLHRAPCPTWLDKACRLECKAK*GYVIARIHVCWGG |
Parental | RKRPVPKGATYGKPVHHGVNQLKFARSLQSVAEERAGRHCGALRVLNSYWVGEDSTYKFFEVILIDPFHK |
....VP.GATYGK.VHHG...LKFA..LQSVAEE.AG.HCG.LRVL.SYWVGE.STYK.FEVILIDPFHK | |
Retrocopy | DRHSVPRGATYGKSVHHGIS*LKFAGNLQSVAEE*AGHHCGILRVLSSYWVGENSTYKVFEVILIDPFHK |
Parental | AIRRNPDT |
.IRRN.DT | |
Retrocopy | VIRRNRDT |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 106 .98 RPM |
SRP017611_kidney | 0 .00 RPM | 145 .52 RPM |
SRP017611_liver | 0 .00 RPM | 90 .88 RPM |
SRP040447_lung | 0 .00 RPM | 229 .18 RPM |
SRP040447_skeletal_muscle | 0 .00 RPM | 285 .11 RPM |