RetrogeneDB ID: | retro_ggor_771 | ||
Retrocopylocation | Organism: | Gorilla (Gorilla gorilla) | |
Coordinates: | 12:8701130..8701742(+) | ||
Located in intron of: | ENSGGOG00000024119 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | ENSG00000174748 | ||
Ensembl ID: | ENSGGOG00000024274 | ||
Aliases: | None | ||
Description: | Ribosomal protein L15 [Source:UniProtKB/TrEMBL;Acc:G3SD81] |
Percent Identity: | 85.29 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 0 |
Parental | MGAYKYIQELWRKKQSDVMRFLLRVRCWQYRQLSALHRAPRPTRPDKARRLGYKAKQGYVIYRIRVRRGG |
MGAYKYIQELWRKKQSDVM.FLLRVRCWQYRQLSALHR.P.PT.PD.A.RLGYKAKQGY.IYRIRV..GG | |
Retrocopy | MGAYKYIQELWRKKQSDVMSFLLRVRCWQYRQLSALHRVPHPTWPDEASRLGYKAKQGYLIYRIRVHPGG |
Parental | RKRPVPKGATYGKPVHHGVNQLKFARSLQSVAEERAGRHCGALRVLNSYWVGEDSTYKFFEVILIDPFHK |
.KRPVPKG.TY.KPV.HGVNQ.KFA..LQSVAEERAGRHCGALRV.NSY.VGED.T.KF..VILIDPF.K | |
Retrocopy | QKRPVPKGTTYRKPVYHGVNQPKFAPNLQSVAEERAGRHCGALRVPNSYCVGEDYT*KFLGVILIDPFYK |
Parental | AIRRNPDTQWITKPVHKHREMRGLTSAGRKSRGLGKGHKFHHTIGGSRRAAWRRRNTLQLHRYR |
AIRRNPDTQWITKPVHKHREMRGLTSAG.KSRGLGKG.KFHHTI.GS..AAWR..NTLQLHRYR | |
Retrocopy | AIRRNPDTQWITKPVHKHREMRGLTSAG*KSRGLGKGRKFHHTICGSHLAAWRMCNTLQLHRYR |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 228 .50 RPM |
SRP007412_cerebellum | 0 .04 RPM | 228 .23 RPM |
SRP007412_heart | 0 .03 RPM | 40 .15 RPM |
SRP007412_kidney | 0 .04 RPM | 240 .79 RPM |
SRP007412_liver | 0 .08 RPM | 203 .88 RPM |
SRP007412_testis | 0 .00 RPM | 229 .16 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_957 |
Pan troglodytes | retro_ptro_663 |