RetrogeneDB ID: | retro_ggor_1327 | ||
Retrocopylocation | Organism: | Gorilla (Gorilla gorilla) | |
Coordinates: | 17:11194398..11194893(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | ENSG00000174748 | ||
Ensembl ID: | ENSGGOG00000024274 | ||
Aliases: | None | ||
Description: | Ribosomal protein L15 [Source:UniProtKB/TrEMBL;Acc:G3SD81] |
Percent Identity: | 74.55 % |
Parental protein coverage: | 80.88 % |
Number of stop codons detected: | 5 |
Number of frameshifts detected | 0 |
Parental | PRPTRPDKARRLGYKAKQGYVIYRIRVRRGGRKRPVPKGATYGKPVHHGVNQLKFARSLQSVAEERAGRH |
P.P....KARRLG.KAK.GY.IYRI.VR.GG.K.PVP.GATY.KPVH.GVN.LKFARSL...AEE.AG.. | |
Retrocopy | PIPQVRYKARRLG*KAK*GYIIYRIHVRHGGGKHPVPTGATYSKPVHPGVNKLKFARSLRFIAEE*AGCY |
Parental | CGALRVLNSYWVGEDSTYKFFEVILIDPFHKAIRRNPDTQWITKPVHKHREMRGLTSAGRKSRGLGKGHK |
CG.LR.LNS.WVG.DS.YKFFEVILID.FHKA.RRNPDT..IT.PVHKHR.M.GL..AG.KS.GLGKG.K | |
Retrocopy | CGPLRGLNSPWVGKDSSYKFFEVILIDTFHKAVRRNPDTL*ITTPVHKHRKMNGLIAAG*KSCGLGKGRK |
Parental | FHHTIGGSRRAAWRRRNTLQLHRYR |
FHHTI.GSRRAAWRR.NTL.LHRYR | |
Retrocopy | FHHTISGSRRAAWRRCNTLWLHRYR |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 228 .50 RPM |
SRP007412_cerebellum | 0 .00 RPM | 228 .23 RPM |
SRP007412_heart | 0 .03 RPM | 40 .15 RPM |
SRP007412_kidney | 0 .00 RPM | 240 .79 RPM |
SRP007412_liver | 0 .00 RPM | 203 .88 RPM |
SRP007412_testis | 0 .00 RPM | 229 .16 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_1804 |
Pan troglodytes | retro_ptro_1178 |
Pongo abelii | retro_pabe_1480 |
Callithrix jacchus | retro_cjac_2532 |