RetrogeneDB ID: | retro_ggor_1611 | ||
Retrocopylocation | Organism: | Gorilla (Gorilla gorilla) | |
Coordinates: | 22:10928758..10929371(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | ENSG00000174748 | ||
Ensembl ID: | ENSGGOG00000024274 | ||
Aliases: | None | ||
Description: | Ribosomal protein L15 [Source:UniProtKB/TrEMBL;Acc:G3SD81] |
Percent Identity: | 89.27 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 6 |
Number of frameshifts detected | 1 |
Parental | MGAYKYIQELWRKKQSDVMRFLLRVRCW-QYRQLSALHRAPRPTRPDKARRLGYKAKQGYVIYRIRVRRG |
MGAYKYIQ.LWRKKQSDVMRFLLRV.CW.QYR.LSALHRAP.PTRPDK...LGYKAKQGYVIYRIRVRRG | |
Retrocopy | MGAYKYIQKLWRKKQSDVMRFLLRVHCW>QYR*LSALHRAPCPTRPDKVY*LGYKAKQGYVIYRIRVRRG |
Parental | GRKRPVPKGATYGKPVHHGVNQLKFARSLQSVAEERAGRHCGALRVLNSYWVGEDSTYKFFEVILIDPFH |
G.K.PVPKGATY.KPVHHGVNQLKFARSLQSVAEERAG.H.GAL.VLNSYWVGEDST.KF.EVILIDPFH | |
Retrocopy | G*KCPVPKGATYSKPVHHGVNQLKFARSLQSVAEERAGHHHGALSVLNSYWVGEDST*KFSEVILIDPFH |
Parental | KAIRRNPDTQWITKPVHKHREMRGLTSAGRKSRGLGKGHKFHHTIGGSRRAAWRRRNTLQLHRYR |
KAIRRNPDTQWI.KPVHKHREMRGLTSAG.KSR.LGKG.KFH.TIGGSRRAA.RRRNTLQLHRYR | |
Retrocopy | KAIRRNPDTQWIIKPVHKHREMRGLTSAG*KSRSLGKGPKFHYTIGGSRRAA*RRRNTLQLHRYR |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 228 .50 RPM |
SRP007412_cerebellum | 0 .00 RPM | 228 .23 RPM |
SRP007412_heart | 0 .00 RPM | 40 .15 RPM |
SRP007412_kidney | 0 .04 RPM | 240 .79 RPM |
SRP007412_liver | 0 .03 RPM | 203 .88 RPM |
SRP007412_testis | 0 .10 RPM | 229 .16 RPM |