RetrogeneDB ID: | retro_ggor_2125 | ||
Retrocopylocation | Organism: | Gorilla (Gorilla gorilla) | |
Coordinates: | 4:137949482..137949980(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSGGOG00000022641 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | ENSG00000174748 | ||
Ensembl ID: | ENSGGOG00000024274 | ||
Aliases: | None | ||
Description: | Ribosomal protein L15 [Source:UniProtKB/TrEMBL;Acc:G3SD81] |
Percent Identity: | 85.54 % |
Parental protein coverage: | 81.37 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MRFLLRVRCWQYRQLSALHRAPRPTRPDKARRLGYKAKQGYVIYRIRVRRGGRKRPVPKGATYGKPVHHG |
MRFLLRV.CWQY.QLSALHRAP...RPDKA..LGYKAKQ.YVIYRIRVR.GGRK.PVPKGATYGKPVHHG | |
Retrocopy | MRFLLRVGCWQYHQLSALHRAPHSIRPDKAHQLGYKAKQVYVIYRIRVRHGGRKHPVPKGATYGKPVHHG |
Parental | VNQLKFARSLQSVAEERAGRHCGALRVLNSYWVGEDSTYKFFEVILIDPFHKAIRRNPDTQWITKPVHKH |
VNQLKFA.SLQS.A.E.AG.HCGAL.VLNS.WVGEDSTYKFFEVILIDPFHKAIRRNPDTQWITKPVHKH | |
Retrocopy | VNQLKFAQSLQSIAKEQAGCHCGALKVLNSHWVGEDSTYKFFEVILIDPFHKAIRRNPDTQWITKPVHKH |
Parental | REMRGLTSAGRKSRGLGKGHKFHHTI |
R.M.GL.SAGRKS..LGKG.K.HHTI | |
Retrocopy | RKMHGLPSAGRKSHSLGKGLKCHHTI |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 228 .50 RPM |
SRP007412_cerebellum | 0 .08 RPM | 228 .23 RPM |
SRP007412_heart | 0 .00 RPM | 40 .15 RPM |
SRP007412_kidney | 0 .08 RPM | 240 .79 RPM |
SRP007412_liver | 0 .13 RPM | 203 .88 RPM |
SRP007412_testis | 0 .21 RPM | 229 .16 RPM |