RetrogeneDB ID: | retro_mdom_1803 | ||
Retrocopylocation | Organism: | Opossum (Monodelphis domestica) | |
Coordinates: | 7:165515598..165516205(-) | ||
Located in intron of: | ENSMODG00000014823 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL15 | ||
Ensembl ID: | ENSMODG00000014880 | ||
Aliases: | None | ||
Description: | ribosomal protein L15 [Source:HGNC Symbol;Acc:10306] |
Percent Identity: | 95.12 % |
Parental protein coverage: | 99.51 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 2 |
Parental | MGAYKYIQELWRKKQSDVMRFLLRVRCWQYRQLSSLHRAPRPTRPDKARRLG-YKAKQGYVIYRIRVRRG |
MGAYKYIQELWRKKQSDVMRFLL.VRCWQYRQLSSLHRAPRPTRPDKA.RLG..KAKQGYVIYRIRV.RG | |
Retrocopy | MGAYKYIQELWRKKQSDVMRFLLWVRCWQYRQLSSLHRAPRPTRPDKAKRLG<FKAKQGYVIYRIRVCRG |
Parental | GRKR-PVPKGATYGKPVHHGVNQLKFARSLQSVAEERAGRHCGALRVLNSYWVGEDSTYKFFEVILIDPF |
GRKR.PVPKGATYGKPVHHGVNQLKFARSLQSVAEERAGRHCGALRVLNSYWVGE.STYKFFEVIL.DPF | |
Retrocopy | GRKR<PVPKGATYGKPVHHGVNQLKFARSLQSVAEERAGRHCGALRVLNSYWVGEHSTYKFFEVILNDPF |
Parental | HKAIRRNPDTQWITKPVHKHREMRGLTSAGRKSRGLGKGHKFHHTIGGSRRAAWRRRNTLQLHRY |
HKAIRRNPDTQWITKPVHKHREMRGLTSAGRKSRGLGKGHKFHHTIGGSRRAAWRRR.TLQLH.Y | |
Retrocopy | HKAIRRNPDTQWITKPVHKHREMRGLTSAGRKSRGLGKGHKFHHTIGGSRRAAWRRRSTLQLH*Y |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .00 RPM | 0 .00 RPM |
SRP007412_cerebellum | 0 .00 RPM | 0 .00 RPM |
SRP007412_heart | 0 .00 RPM | 0 .00 RPM |
SRP007412_kidney | 0 .00 RPM | 0 .00 RPM |
SRP007412_liver | 0 .00 RPM | 0 .00 RPM |
SRP007412_testis | 0 .00 RPM | 0 .00 RPM |