RetrogeneDB ID: | retro_fcat_985 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | B4:105211003..105211610(+) | ||
Located in intron of: | ENSFCAG00000026300 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSFCAG00000026237 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 70.05 % |
Parental protein coverage: | 99.51 % |
Number of stop codons detected: | 5 |
Number of frameshifts detected | 4 |
Parental | MGAYKYIQELWRKKQSDVMRFLLRVRCWQYRQLSALHRA-PRPTRPDKARRLGYKAKQGYVIYRIRVR-R |
MG.Y.YIQELWRKKQS.....LLRV..W.Y.QLS.L.RA.P.P..P.KA...GYKAKQGY.IY.I.V... | |
Retrocopy | MGVYRYIQELWRKKQSNGTSSLLRVHFW*YQQLSVLDRA<PCPNWPKKAHTQGYKAKQGYIIYWICVQ>V |
Parental | GGRKRPVPKGATYGKPVHHGVNQLKFARSLQSVAEERAGRHCGALRVLNSYWVGEDSTYKFFEVILIDPF |
GG.K..VPKGA.Y.KP.HHG.NQLK...SLQS.AEE.AG.HCG.LRVLNSY.VG.DSTYKF..VILID.F | |
Retrocopy | GGHKHQVPKGAAYRKPAHHGINQLKLSQSLQSLAEE*AGHHCGGLRVLNSY*VGKDSTYKFCQVILIDQF |
Parental | HKAIRRNPDTQWITKPVHKHREMRGLTSAGRKS-RGLGKGHKFHHTIGGSRRAAWRRR-NTLQLHRY |
HKAIRRNPDTQ.ITKPV.KHREM.GLTSAG.....GLGKG.K.HH..GGSR.AA.RRR.NTLQLH.Y | |
Retrocopy | HKAIRRNPDTQ*ITKPVYKHREM*GLTSAGYEN<CGLGKGNKVHHATGGSRHAAGRRR<NTLQLHYY |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 545 .97 RPM |
SRP017611_kidney | 0 .00 RPM | 784 .48 RPM |
SRP017611_liver | 0 .00 RPM | 435 .80 RPM |