RetrogeneDB ID: | retro_ocun_746 | ||
Retrocopylocation | Organism: | Rabbit (Oryctolagus cuniculus) | |
Coordinates: | 14:46854542..46855562(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSOCUG00000024788 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | LDHA | ||
Ensembl ID: | ENSOCUG00000015939 | ||
Aliases: | None | ||
Description: | lactate dehydrogenase A (LDHA), mRNA [Source:RefSeq mRNA;Acc:NM_001082277] |
Percent Identity: | 97.65 % |
Parental protein coverage: | 94.18 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | IPFGSRSKMAALKDQLIHNLLKEEHVPQNKITVVGVGAVGMACAISILMKDLADELALVDVMEDKLKGEM |
IPFGSRSKMAALKD.LIHNLLKEEHVPQNKI.VVGVGAVGMACAISILMKDLADEL.LVDVMEDKLKGEM | |
Retrocopy | IPFGSRSKMAALKDRLIHNLLKEEHVPQNKIMVVGVGAVGMACAISILMKDLADELVLVDVMEDKLKGEM |
Parental | MDLQHGSLFLRTPKIVSGKDYSVTANSKLVIITAGARQQEGESRLNLVQRNVNIFKFIIPNVVKYSPHCK |
MDLQHGSLFLRTPKIVSGKDYSVTANSKLVIITAGARQQEGESRLNLVQRNVNIFKFIIPNVVKYSPH.K | |
Retrocopy | MDLQHGSLFLRTPKIVSGKDYSVTANSKLVIITAGARQQEGESRLNLVQRNVNIFKFIIPNVVKYSPHGK |
Parental | LLVVSNPVDILTYVAWKISGFPKNRVIGSGCNLDSARFRYLMGERLGVHALSCHGWILGEHGDSSVPVWS |
LLVVSNPVDILTYVAWKISGFPKNRVIGSGCNLDSARFRYLMGERLGVH.LSCH.WILGEHGDSSVPVWS | |
Retrocopy | LLVVSNPVDILTYVAWKISGFPKNRVIGSGCNLDSARFRYLMGERLGVHPLSCHCWILGEHGDSSVPVWS |
Parental | GMNVAGVSLKTLHPELGTDADKEQWKQVHKQVVDSAYEVIKLKGYTSWAIGLSVADLAESIMKNLRRVHP |
.MN.AGVSLKTLHPELGTDADKEQWKQVHKQVVDSAYEVIKLKGYTSWAIGLSVADLAESIMKNLRRVHP | |
Retrocopy | SMNIAGVSLKTLHPELGTDADKEQWKQVHKQVVDSAYEVIKLKGYTSWAIGLSVADLAESIMKNLRRVHP |
Parental | ISTMIKGLYGIKEDVFLSVPCVLGQNGISDVVKVTLTSEEEAHLKKSADTLWGIQKELQF |
ISTMIKGLYGIKEDVFLSVPCVLGQNGISDVVKVTLTSEEEAHLKKSADTLWGIQKELQF | |
Retrocopy | ISTMIKGLYGIKEDVFLSVPCVLGQNGISDVVKVTLTSEEEAHLKKSADTLWGIQKELQF |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 4 .36 RPM | 108 .17 RPM |
SRP017611_kidney | 1 .01 RPM | 46 .12 RPM |
SRP017611_liver | 3 .16 RPM | 113 .15 RPM |