RetrogeneDB ID: | retro_ocun_1817 | ||
Retrocopylocation | Organism: | Rabbit (Oryctolagus cuniculus) | |
Coordinates: | GL019010:207189..208209(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSOCUG00000026601 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | LDHA | ||
Ensembl ID: | ENSOCUG00000015939 | ||
Aliases: | None | ||
Description: | lactate dehydrogenase A (LDHA), mRNA [Source:RefSeq mRNA;Acc:NM_001082277] |
Percent Identity: | 95.88 % |
Parental protein coverage: | 94.18 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | IPFGSRSKMAALKDQLIHNLLKEEHVPQNKITVVGVGAVGMACAISILMKDLADELALVDVMEDKLKGEM |
IPFGSRSKMAALKDQLIHNLLKEEHVPQNKITVVGVGAVGMACAIS.LMKDLADELALVDVMEDKLKGEM | |
Retrocopy | IPFGSRSKMAALKDQLIHNLLKEEHVPQNKITVVGVGAVGMACAISMLMKDLADELALVDVMEDKLKGEM |
Parental | MDLQHGSLFLRTPKIVSGKDYSVTANSKLVIITAGARQQEGESRLNLVQRNVNIFKFIIPNVVKYSPHCK |
MDLQHGSLFLRTPKIVSGKDYSVTANSKLVII.AGA.QQEGESRLNLVQRNVNIFKFIIPNVVKYSP.CK | |
Retrocopy | MDLQHGSLFLRTPKIVSGKDYSVTANSKLVIIMAGAQQQEGESRLNLVQRNVNIFKFIIPNVVKYSPNCK |
Parental | LLVVSNPVDILTYVAWKISGFPKNRVIGSGCNLDSARFRYLMGERLGVHALSCHGWILGEHGDSSVPVWS |
LLVVSNPVDILTYVAWKISGFPKNRVIGSGCNLDSARF.YLMGERLGVH.LSCHGWILGEHGDSSVPVW. | |
Retrocopy | LLVVSNPVDILTYVAWKISGFPKNRVIGSGCNLDSARFHYLMGERLGVHPLSCHGWILGEHGDSSVPVWN |
Parental | GMNVAGVSLKTLHPELGTDADKEQWKQVHKQVVDSAYEVIKLKGYTSWAIGLSVADLAESIMKNLRRVHP |
GMNVA.VSLKTLH.ELGTDADKEQWK.VHKQVVDSAYEVIKLKGYTSWAIGLSVADLAESIMKNLRRVH. | |
Retrocopy | GMNVADVSLKTLHSELGTDADKEQWKPVHKQVVDSAYEVIKLKGYTSWAIGLSVADLAESIMKNLRRVHL |
Parental | ISTMIKGLYGIKEDVFLSVPCVLGQNGISDVVKVTLTSEEEAHLKKSADTLWGIQKELQF |
ISTMIKGLYGIKE.VFLSVPCVLGQNGISD.VKVTLTSEEEAHLKKS.DTLWGIQKELQF | |
Retrocopy | ISTMIKGLYGIKEEVFLSVPCVLGQNGISDIVKVTLTSEEEAHLKKSTDTLWGIQKELQF |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .17 RPM | 108 .17 RPM |
SRP017611_kidney | 0 .00 RPM | 46 .12 RPM |
SRP017611_liver | 0 .23 RPM | 113 .15 RPM |