RetrogeneDB ID: | retro_ocun_574 | ||
Retrocopylocation | Organism: | Rabbit (Oryctolagus cuniculus) | |
Coordinates: | 12:101719696..101720714(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSOCUG00000022352 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | LDHA | ||
Ensembl ID: | ENSOCUG00000015939 | ||
Aliases: | None | ||
Description: | lactate dehydrogenase A (LDHA), mRNA [Source:RefSeq mRNA;Acc:NM_001082277] |
Percent Identity: | 96.78 % |
Parental protein coverage: | 94.18 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 2 |
Parental | IPFGSRSKMAALKDQLIHNLLKEEHVPQNKITVVGVGAVGMACAISILMKDLADELALVDVMEDKLKGEM |
IPFGSRSKMAALKDQLIHNLLKEEHVPQNKITVVGVGAVGMACAISILMKDLADELALVDVMEDKLKGEM | |
Retrocopy | IPFGSRSKMAALKDQLIHNLLKEEHVPQNKITVVGVGAVGMACAISILMKDLADELALVDVMEDKLKGEM |
Parental | MDLQHGSLFLRTPKIVSGKDYSVTANSKLVIITAGARQQEGES-RLNLVQRNVNIFKFIIPNVVKYSPHC |
MDLQHGSLFLRTPKIVSGKDY.VTANSKLVII.AGARQQEGES.RLNLVQR.VNIFKFII.NVVKYSPHC | |
Retrocopy | MDLQHGSLFLRTPKIVSGKDYGVTANSKLVIIMAGARQQEGES<RLNLVQRKVNIFKFIILNVVKYSPHC |
Parental | KLLVVSNPVDILTYVAWKISGFPKNRVIGSGCNLDSARFRYLMGERLGVHALSCHGWILGEHGDSSVPVW |
KLLVVSNPVDILTYVAWKISGFPKNRVIGSGCNLDSARF.YLMGERLGVH.LSCHGWILGEHGDSSVPVW | |
Retrocopy | KLLVVSNPVDILTYVAWKISGFPKNRVIGSGCNLDSARFHYLMGERLGVHPLSCHGWILGEHGDSSVPVW |
Parental | SGMNVAGVSLKTLHPELGTDADKEQWKQVHKQVVDSAYEVIKLKGYTSWAIGLSVADLAESIMKNLRRVH |
SGM.VAGVSLKTLHPELGT.ADKEQWKQVHKQVVDSAYEVIKLKGYTSWAIGLSVADLAESIMKNLRRVH | |
Retrocopy | SGMKVAGVSLKTLHPELGTHADKEQWKQVHKQVVDSAYEVIKLKGYTSWAIGLSVADLAESIMKNLRRVH |
Parental | PISTMIKGLYGIKEDVFLSVPCVLGQNGISDVVK-VTLTSEEEAHLKKSADTLWGIQKELQF |
PISTMIKGLYGIKEDVFLSVPCVLGQNGISDVV..VTLTSEEEAHLKKSADTLWGIQKELQF | |
Retrocopy | PISTMIKGLYGIKEDVFLSVPCVLGQNGISDVVR<VTLTSEEEAHLKKSADTLWGIQKELQF |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .06 RPM | 108 .17 RPM |
SRP017611_kidney | 0 .00 RPM | 46 .12 RPM |
SRP017611_liver | 0 .00 RPM | 113 .15 RPM |