RetrogeneDB ID:

retro_ttru_1820

Retrocopy
location
Organism:Dolphin (Tursiops truncatus)
Coordinates:scaffold_92735:4203..4426(+)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:None
Ensembl ID:ENSTTRG00000013656
Aliases:None
Description:None


Retrocopy-Parental alignment summary:






>retro_ttru_1820
GCCTCCGTCTCCGAGTTCACCTGCATCTACCCAACCCTTATCCTGCACGAGGATGAGATGCCACTAACGTAGGGTATGAT
CAACGCCCTCATTAAAGCAGCCAGTGTGAATGTCGAACCTTTCTGGCCAGGTTTGTTTGCAAAGGTCCTGGCCAATGTCA
ACACCCAGACGCTTATCTGCAGCATAGGGCTAGTGGCCCTGCCCAGCAGGAGGTCTTGCCCCG

ORF - retro_ttru_1820 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 70.13 %
Parental protein coverage: 65.79 %
Number of stop codons detected: 1
Number of frameshifts detected 2


Retrocopy - Parental Gene Alignment:

ParentalASVSELACIYSALILHDDEVTVTEDKINALIKAAGVNVEPFWPGLFAKALANVNIGSLICNVG-AGGPA-
ASVSE..CIY..LILH.DE...T...INALIKAA.VNVEPFWPGLFAK.LANVN...LIC..G.A.GPA.
RetrocopyASVSEFTCIYPTLILHEDEMPLT*GMINALIKAASVNVEPFWPGLFAKVLANVNTQTLICSIG<ASGPA<
ParentalPAAGAAP
PA.G.AP
RetrocopyPAGGLAP

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






Tursiops truncatus was not studied using RNA-Seq expression data.
Tursiops truncatus was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_ttru_1820 retrocopy.
Tursiops truncatus was not studied using FANTOM5 data.
retro_ttru_1820 was not experimentally validated.

Retrocopy orthology:
Tursiops truncatus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:
Parental genes homology involve 11 parental genes, and 92 retrocopies.

Species Parental gene accession Retrocopies number
Choloepus hoffmanni ENSCHOG0000000594410 retrocopies
Felis catus ENSFCAG0000003203723 retrocopies
Latimeria chalumnae ENSLACG000000126301 retrocopy
Macropus eugenii ENSMEUG000000152776 retrocopies
Macropus eugenii ENSMEUG000000152822 retrocopies
Monodelphis domestica ENSMODG000000092091 retrocopy
Monodelphis domestica ENSMODG000000092184 retrocopies
Oryctolagus cuniculus ENSOCUG000000150878 retrocopies
Ochotona princeps ENSOPRG0000000116311 retrocopies
Sarcophilus harrisii ENSSHAG000000148186 retrocopies
Tursiops truncatus ENSTTRG00000013656 20 retrocopies



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