RetrogeneDB ID: | retro_fcat_1594 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | D4:66559684..66560022(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSFCAG00000032037 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 77.78 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 3 |
Parental | MASVSELA-CIYSALILH-DDEVTVTEDKINALIKAAGVNVEPFWPGLFAKALANVNIG-SLICNVGAGG |
M.S..EL..CIYSA.ILH..DEVTV.E.KIN.LIKAA.VNVEPFWPGL.AK.LANVNIG.SLICNVG.GG | |
Retrocopy | MVSILELT<CIYSAFILH>SDEVTVMEGKINVLIKAAWVNVEPFWPGLLAKTLANVNIG<SLICNVGTGG |
Parental | PAPAAGAAPAGGPAPSTTAAPAEEKKVEAKKEESEESDDDMGFGLFD |
PAP.AGAAPA...APSTTAAPAE.K.VEAKKEESEES.DD..F.LFD | |
Retrocopy | PAPEAGAAPADS-APSTTAAPAEKKEVEAKKEESEESVDDTYFDLFD |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 57 .04 RPM |
SRP017611_kidney | 0 .00 RPM | 269 .08 RPM |
SRP017611_liver | 0 .00 RPM | 111 .70 RPM |