RetrogeneDB ID:

retro_fcat_1466

Retrocopy
location
Organism:Cat (Felis catus)
Coordinates:D1:102175200..102175485(-)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:None
Ensembl ID:ENSFCAG00000032037
Aliases:None
Description:None


Retrocopy-Parental alignment summary:






>retro_fcat_1466
GTTCCCAAGCTCACCTGTATCTTCTCAGCCTTCATCCTGCACCCAGTGAGGCGAATGTTACGGAGGATAAGATCAATGCC
ATCATTAAAGCAGTCAGTGTAAATATTGAACCATTCTGGCCAGGCTTATTTGTAAAGGCCCTGGCCAATGTCAACATCAG
GAGGCTCACCTGCAACACACAGGGGCTGGTGAGCCTGCCCAGCAGGTCCTGCTGCACCAGCAGGAGGTTCTGCTCCCTCT
GCCATCACTGCCCCAGCTGAGGAGAAGAAAGTACAAGGAGAGAAG

ORF - retro_fcat_1466 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 63.92 %
Parental protein coverage: 83.33 %
Number of stop codons detected: 0
Number of frameshifts detected 2


Retrocopy - Parental Gene Alignment:

ParentalVSELACIYSALILHD-DEVTVTEDKINALIKAAGVNVEPFWPGLFAKALANVNIGSLICNVGAGGPAP-A
V..L.CI.SA.ILH...E..VTEDKINA.IKA..VN.EPFWPGLF.KALANVNI..L.CN.......P.A
RetrocopyVPKLTCIFSAFILHP<SEANVTEDKINAIIKAVSVNIEPFWPGLFVKALANVNIRRLTCNTQGLVSLP>A
ParentalAGAAPAGGPAPSTTAAPAEEKKVEAKK
..AAPAGG.APS...APAEEKKV...K
RetrocopyGPAAPAGGSAPSAITAPAEEKKVQGEK

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






(Hint: click retrocopy or parental gene accession number on the plot's legend, to show / hide expression level values)

Expression validation based on RNA-Seq data:
Library Retrocopy expression Parental gene expression
SRP017611_brain 0 .00 RPM 57 .04 RPM
SRP017611_kidney 0 .00 RPM 269 .08 RPM
SRP017611_liver 0 .00 RPM 111 .70 RPM
Felis catus was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_fcat_1466 retrocopy.
Felis catus was not studied using FANTOM5 data.
retro_fcat_1466 was not experimentally validated.

Retrocopy orthology:
Felis catus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:
Parental genes homology involve 11 parental genes, and 92 retrocopies.

Species Parental gene accession Retrocopies number
Choloepus hoffmanni ENSCHOG0000000594410 retrocopies
Felis catus ENSFCAG00000032037 23 retrocopies
Latimeria chalumnae ENSLACG000000126301 retrocopy
Macropus eugenii ENSMEUG000000152776 retrocopies
Macropus eugenii ENSMEUG000000152822 retrocopies
Monodelphis domestica ENSMODG000000092091 retrocopy
Monodelphis domestica ENSMODG000000092184 retrocopies
Oryctolagus cuniculus ENSOCUG000000150878 retrocopies
Ochotona princeps ENSOPRG0000000116311 retrocopies
Sarcophilus harrisii ENSSHAG000000148186 retrocopies
Tursiops truncatus ENSTTRG0000001365620 retrocopies



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