RetrogeneDB ID: | retro_fcat_849 | ||
Retrocopy location | Organism: | Cat (Felis catus) | |
| Coordinates: | B3:77999118..77999338(+) | ||
| Located in intron of: | None | ||
Retrocopy information | Ensembl ID: | None | |
| Aliases: | None | ||
| Status: | NOVEL | ||
Parental gene information | Parental gene summary: | ||
| Parental gene symbol: | None | ||
| Ensembl ID: | ENSFCAG00000032037 | ||
| Aliases: | None | ||
| Description: | None |
Retrocopy-Parental alignment summary:
>retro_fcat_849
ATGGCATCTGCCTTCAAGCTCATCTGCATCTACTCTGCTCTCATTTTGTACAATGATGAGGTAATGGTGGCGGAGAAGAT
CTGTGCCCTCGTTAAAGCAGCAGGTGTAAAAGTTGAACCTTTCTGGCCTCCCTTATTTGCAAAGGCCCTGACCAACATCC
TCAATATCTGGAGCCTTATCTGCAAAGGTCGGAGCTGGTGGGCCCACCTCAGCAGCTGGA
ORF - retro_fcat_849 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
| Percent Identity: | 72.0 % |
| Parental protein coverage: | 64.04 % |
| Number of stop codons detected: | 0 |
| Number of frameshifts detected: | 1 |
Retrocopy - Parental Gene Alignment:
| Parental | MASVSELACIYSALILHDDEVTVTEDKINALIKAAGVNVEPFWPGLFAKALANV-NIGSLIC-NVGAGGP |
| MAS...L.CIYSALIL..DEV.V.E.KI.AL.KAAGV.VEPFWP.LFAKAL.N..NI.SLIC..VGAGGP | |
| Retrocopy | MASAFKLICIYSALILYNDEVMVAE-KICALVKAAGVKVEPFWPPLFAKALTNILNIWSLIC>KVGAGGP |
| Parental | APAAG |
| ..AAG | |
| Retrocopy | TSAAG |
Legend:
| * | Stop codon |
| > | Forward frameshift by one nucleotide |
| < | Reverse frameshift by one nucleotide |
(Hint: click retrocopy or parental gene accession number on the plot's legend, to show / hide expression level values)
Expression validation based on RNA-Seq data:
| Library | Retrocopy expression | Parental gene expression |
|---|---|---|
| SRP017611_brain | 0 .00 RPM | 57 .04 RPM |
| SRP017611_kidney | 0 .00 RPM | 269 .08 RPM |
| SRP017611_liver | 0 .00 RPM | 111 .70 RPM |
Felis catus was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_fcat_849 retrocopy.
Felis catus was not studied using FANTOM5 data.
retro_fcat_849 was not experimentally validated.