RetrogeneDB ID: | retro_btau_443 | ||
Retrocopylocation | Organism: | Cow (Bos taurus) | |
Coordinates: | 11:57225676..57226272(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | BT.33239 | ||
Ensembl ID: | ENSBTAG00000007202 | ||
Aliases: | None | ||
Description: | etoposide-induced protein 2.4 homolog [Source:RefSeq peptide;Acc:NP_001069433] |
Percent Identity: | 68.81 % |
Parental protein coverage: | 58.53 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 3 |
Parental | KREEQRRRRASSILAQRRAQSIERKQESEPR-IVSRIFQCCAWNGGV-FWFSLLLFYRVFIPVLQ-SVTA |
KRE.....R...ILAQRR.QSI.RKQE.EP..IVSR.FQCC..NGGV.FWFSLLLFY.VF.PVL..S..A | |
Retrocopy | KRERNSGKRTIRILAQRRVQSIVRKQECEPV<IVSRNFQCCT*NGGV>FWFSLLLFYQVFVPVLS<SLMA |
Parental | QIIGDPLLHGDVWSWLEFFLTSIFSALWVLPLFVLSKVVNAIWFQDIADLAFEVSGRKPHPFPSVSKIIA |
QI.G.P...GDV...LE.FLTS.F...WVL.LFV.SK.VN.I.FQDI..LAFEVS.RKPHPFPS.S.IIA | |
Retrocopy | QITGEPSRNGDVCLQLECFLTSNFIVVWVLLLFVFSKAVNPILFQDIIELAFEVSERKPHPFPSISRIIA |
Parental | DMLFNLLLQALFLLQGMFVSLFPIHLVGQLVSLLHMSLLYSLYCFEYRWFNKGIEMHQRLSN |
D..FN..L.ALFLLQ.MFVSLFPIHL.GQLV.LL..SLLYSL..FE..WFNKG.E.HQ.LSN | |
Retrocopy | DTFFNIVLWALFLLQRMFVSLFPIHLAGQLVGLLYTSLLYSLHFFECHWFNKGTEIHQWLSN |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
ERP005899_liver | 0 .00 RPM | 35 .11 RPM |
ERP005899_muscle | 0 .00 RPM | 45 .77 RPM |
SRP017611_brain | 0 .00 RPM | 38 .32 RPM |
SRP017611_kidney | 0 .00 RPM | 51 .21 RPM |
SRP017611_liver | 0 .00 RPM | 45 .98 RPM |
SRP030211_testis | 0 .03 RPM | 14 .96 RPM |