RetrogeneDB ID: | retro_dnov_1421 | ||
Retrocopylocation | Organism: | Armadillo (Dasypus novemcinctus) | |
Coordinates: | scaffold_201052:253..989(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | EI24 | ||
Ensembl ID: | ENSDNOG00000002362 | ||
Aliases: | None | ||
Description: | etoposide induced 2.4 [Source:HGNC Symbol;Acc:13276] |
Percent Identity: | 77.29 % |
Parental protein coverage: | 69.38 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 4 |
Parental | GIKDSIWGICTISKLDARIQQKREE-QRRRRASSILAQRRAQSIERKQESEPRIVNRIFQCCAWNGGVFW |
GIKDSIWGICTISKLD..IQQKRE...RR.R.SS.LA..R.QSIE.KQES.P.IV.R.FQCCAWNG.VFW | |
Retrocopy | GIKDSIWGICTISKLDTLIQQKREV>RRR-RSSSVLAYWRVQSIEWKQESKPHIVSRVFQCCAWNGKVFW |
Parental | FSLLLFYRVFIPVLQSVTAQIIGDPSLHGDVWSWLEFFLTSIFSALWVLPL-FVLSKV-VNAIWFQDIAD |
FSLL.FY.V..PVLQSVTAQIIGDPSLHGDVW..LE.FL.SIFSALWVLP....L.K..V.AIWFQDIAD | |
Retrocopy | FSLL*FYPVYTPVLQSVTAQIIGDPSLHGDVWLRLECFLKSIFSALWVLPV<LCLAKL<VHAIWFQDIAD |
Parental | LAFEVSGRKPHPFPSVSKIIADMLFNLLLQALFLIQGMFVSL-FPIHLVGQLVSLLHMSLLYSLYCFEYR |
LAFEVSG.K.HPFPSVSKI.A.M.FNLLLQ..FLIQG...SL.FP..L.GQLV.LLHM.LLYSLY.F.Y. | |
Retrocopy | LAFEVSGSKSHPFPSVSKINAIMFFNLLLQYPFLIQGFYESL<FPSILFGQLVNLLHMCLLYSLYFFKYP |
Parental | WFNKGIEMHQRLSNIERNWPYYFGFGLPLAFLTAMQSSYII |
WFNKGIE.HQ.LSNI.R.WPYYFGFGLPLAFLTAM.SSYII | |
Retrocopy | WFNKGIEIHQWLSNI*RIWPYYFGFGLPLAFLTAMLSSYII |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012922_ascending_colon | 0 .00 RPM | 23 .53 RPM |
SRP012922_cerebellum | 0 .00 RPM | 21 .31 RPM |
SRP012922_heart | 0 .00 RPM | 21 .11 RPM |
SRP012922_kidney | 0 .00 RPM | 27 .11 RPM |
SRP012922_liver | 0 .00 RPM | 49 .69 RPM |
SRP012922_lung | 0 .00 RPM | 31 .46 RPM |
SRP012922_quadricep_muscle | 0 .00 RPM | 35 .31 RPM |
SRP012922_spleen | 0 .00 RPM | 27 .36 RPM |