Parental gene:

EI24, ENSPTRG00000004444

Aliases:None
Description:None
Organism:Chimpanzee (Pan troglodytes)
Coordinates:11:123553155..123569034(+)


>ENSPTRG00000004444
ATGGCTGACAGTGTCAAAACCTTTCTCCAGGACCTTGCCAGAGGAATCAAAGACTCCATCTGGGGTATTTGTACCATCTC
AAAGCTAGATGCTCGAATCCAGCAAAAGAGAGAGGAGCAGCGTCGAAGAAGGGCAAGTAGTGTCTTGGCACAGAGAAGAG
CCCAGAGTATAGAGCGGAAGCAAGAGAGTGAGCCACGTATTGTTAGTAGAATTTTCCAGTGTTGTGCTTGGAATGGTGGA
GTGTTCTGGTTCAGTCTCCTCTTGTTTTATCGAGTCTTTATTCCTGTGCTTCAGTCGGTAACAGCCCGAATTATCGGTGA
CCCATCACTACATGGAGATGTTTGGTCGTGGCTGGAATTCTTCCTCACGTCAATTTTCAGTGCTCTTTGGGTGCTCCCCT
TGTTTGTGCTTAGCAAAGTGGTGAATGCCATTTGGTTTCAGGATATAGCTGACCTGGCATTTGAGGTATCAGGGAGGAAG
CCTCACCCATTCCCTAGTGTCAGCAAAATAATTGCTGACATGCTCTTCAACCTTTTGCTGCAGGCTCTTTTCCTCATTCA
GGGAATGTTTGTGAGTCTCTTTCCCATCCATCTTGTCGGTCAGCTGGTTAGTCTCCTGCATATGTCCCTTCTCTACTCAC
TGTACTGCTTTGAATATCGTTGGTTCAATAAAGGAATTGAAATGCACCAGCGGTTGTCTAACATAGAAAGGAATTGGCCT
TACTACTTTGGGTTTGGTTTGCCCTTGGCTTTTCTCACAGCAATGCAGTCCTCATATATTATCAGTGGCTGCCTTTTCTC
TATCCTCTTTCCTTTATTCATTATCAGCGCCAATGAAGCAAAGACCCCTGGCAAAGCGTATCTCTTCCAGTTGCGCCTCT
TCTCCTTGGTGGTCTTCTTAAGCAACAGACTCTTCCACAAGACAGTCTACCTGCAGTCGGCCCTGAGCAGCTCTACTTCT
GCAGAGAAGTTCCCTTCACCGCATCCGTCGCCTGCCAAACTGAAGGCTGCTGCAGGTCACTGA

Library Parental gene expression (RPM)
SRP007412_brain_prefrontal_cortex 55 .79 RPM
SRP007412_cerebellum 54 .85 RPM
SRP007412_heart 42 .61 RPM
SRP007412_kidney 67 .65 RPM
SRP007412_liver 105 .04 RPM
SRP007412_testis 63 .44 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000000990 ortholog_one2one 2 retrogenes
retro_amel_1449, retro_amel_1681,
Bos taurus ENSBTAG00000007202 ortholog_one2one 2 retrogenes
retro_btau_1242, retro_btau_443,
Canis familiaris ENSCAFG00000010898 ortholog_one2one 1 retrogene
retro_cfam_1829,
Choloepus hoffmanni ENSCHOG00000012669 ortholog_one2one 3 retrogenes
retro_chof_1433, retro_chof_1994, retro_chof_804,
Cavia porcellus ENSCPOG00000007272 ortholog_one2one 2 retrogenes
retro_cpor_132, retro_cpor_929,
Dasypus novemcinctus ENSDNOG00000002362 ortholog_one2one 4 retrogenes
retro_dnov_1083, retro_dnov_1421, retro_dnov_2143, retro_dnov_2345,
Equus caballus ENSECAG00000015861 ortholog_one2one 1 retrogene
retro_ecab_1022,
Erinaceus europaeus ENSEEUG00000003274 ortholog_one2one 1 retrogene
retro_eeur_435,
Felis catus ENSFCAG00000015100 ortholog_one2one 1 retrogene
retro_fcat_1754,
Homo sapiens ENSG00000149547 ortholog_one2one 3 retrogenes
retro_hsap_236, retro_hsap_2782, retro_hsap_3804,
Loxodonta africana ENSLAFG00000010888 ortholog_one2many 15 retrogenes
retro_lafr_262, retro_lafr_263, retro_lafr_264, retro_lafr_265, retro_lafr_394, retro_lafr_395, retro_lafr_396, retro_lafr_397, retro_lafr_398, retro_lafr_399, retro_lafr_566, retro_lafr_589, retro_lafr_626, retro_lafr_627, retro_lafr_999,
Microcebus murinus ENSMICG00000003023 ortholog_one2one 3 retrogenes
retro_mmur_398, retro_mmur_498, retro_mmur_632,
Myotis lucifugus ENSMLUG00000001583 ortholog_one2one 1 retrogene
retro_mluc_1249,
Macaca mulatta ENSMMUG00000010009 ortholog_one2one 3 retrogenes
retro_mmul_1443, retro_mmul_1653, retro_mmul_2244,
Nomascus leucogenys ENSNLEG00000007451 ortholog_one2one 3 retrogenes
retro_nleu_2149, retro_nleu_684, retro_nleu_853,
Oryctolagus cuniculus ENSOCUG00000014670 ortholog_one2one 1 retrogene
retro_ocun_1578,
Otolemur garnettii ENSOGAG00000001838 ortholog_one2one 6 retrogenes
retro_ogar_1055, retro_ogar_1379, retro_ogar_2700, retro_ogar_2701, retro_ogar_659, retro_ogar_799,
Ochotona princeps ENSOPRG00000013491 ortholog_one2one 2 retrogenes
retro_opri_106, retro_opri_1130,
Procavia capensis ENSPCAG00000012762 ortholog_one2one 1 retrogene
retro_pcap_452,
Pongo abelii ENSPPYG00000004033 ortholog_one2one 3 retrogenes
retro_pabe_2234, retro_pabe_3107, retro_pabe_416,
Pteropus vampyrus ENSPVAG00000004532 ortholog_one2one 1 retrogene
retro_pvam_1124,
Rattus norvegicus ENSRNOG00000030391 ortholog_one2one 1 retrogene
retro_rnor_2605,
Sarcophilus harrisii ENSSHAG00000017333 ortholog_one2one 1 retrogene
retro_shar_433,
Ictidomys tridecemlineatus ENSSTOG00000004299 ortholog_one2one 2 retrogenes
retro_itri_1343, retro_itri_1373,
Tarsius syrichta ENSTSYG00000004747 ortholog_one2one 2 retrogenes
retro_tsyr_1238, retro_tsyr_1423,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_ptro_206 88.82 100.00
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2. retro_ptro_1202 50.26 53.24
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3. retro_ptro_1883 74.40 72.35
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4. retro_ptro_2581 74.62 75.88
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Download FASTA sequences of all ENSPTRG00000004444 retrocopies