RetrogeneDB ID: | retro_pabe_416 | ||
Retrocopylocation | Organism: | Orangutan (Pongo abelii) | |
Coordinates: | 1:93017677..93018678(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | EI24 | ||
Ensembl ID: | ENSPPYG00000004033 | ||
Aliases: | None | ||
Description: | etoposide induced 2.4 [Source:HGNC Symbol;Acc:13276] |
Percent Identity: | 81.82 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 1 |
Parental | MADSVKTFLQDLARGIKDSIWGICTISKLDARIQQKREEQRRRRASSVLAQRRAQSIERKQESEPRIVSR |
MADSVKTFLQDLARGIKDSIWGICTISKLDA.IQ.KREEQ..RRASSVLAQRRAQ.IE..QE.EP..VSR | |
Retrocopy | MADSVKTFLQDLARGIKDSIWGICTISKLDAQIQEKREEQP*RRASSVLAQRRAQRIEWRQENEPCVVSR |
Parental | IFQCCAWNGGVFWFSLLLFYRVFIPVLQSVTARIIGDPSLHGDVWSWLEFFLTSVFSALWVLPLFVLSKV |
IFQCCAWNGGVF.FSLLL.Y..FIPVLQSVTA.IIGDPSLH.DVW.WLEFFL.S.F.ALWVLPLFVLSKV | |
Retrocopy | IFQCCAWNGGVFLFSLLLYYQIFIPVLQSVTAQIIGDPSLHRDVW*WLEFFLRSIFNALWVLPLFVLSKV |
Parental | VNAIWFQDIADLAFEVSGRKPHPFPSVSKIIADMLFNLLLQ-ALFLIQGMFVSLFPIHLVGQLVSLLHMS |
VNAIWFQDIADL..EVSGRKPHPFPSVSKIIADMLFNLLLQ...F.I...F.......LV..L...L..S | |
Retrocopy | VNAIWFQDIADLTIEVSGRKPHPFPSVSKIIADMLFNLLLQ<GMFVI--LFLIHLVCQLVSLLHMSLLYS |
Parental | LLYSLYCFEYRWFNKGIEMHQRLSNIERNWPYYFGFGLPLAFLTAMQSSYIISGCLFSILFPLFIISANE |
L....YC....W.NKGIE.HQ.LSNIE.NWPYYFGFGLPLAFL.AMQSSY.ISGCLFSILF.LFIISANE | |
Retrocopy | LYCFEYC----WLNKGIEIHQQLSNIESNWPYYFGFGLPLAFLIAMQSSYTISGCLFSILFRLFIISANE |
Parental | AKTPGKAYLFQLRLFSLVVFLSNRLFHKTVYLQSALSSSTSAEKFPSPHPSPAKLKAAAGH |
AKTPGK.YLFQL.L.SLVVFLSNRLFHKTVYLQSALSSSTSAEKFPSPHPS.AKLKAAAGH | |
Retrocopy | AKTPGKVYLFQLCLSSLVVFLSNRLFHKTVYLQSALSSSTSAEKFPSPHPSLAKLKAAAGH |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .06 RPM | 55 .12 RPM |
SRP007412_cerebellum | 0 .00 RPM | 51 .44 RPM |
SRP007412_heart | 0 .03 RPM | 32 .84 RPM |
SRP007412_kidney | 0 .00 RPM | 54 .39 RPM |
SRP007412_liver | 0 .00 RPM | 76 .35 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_236 |
Pan troglodytes | retro_ptro_206 |